Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48073 134 1e-26 seq37708 134 1e-26 seq28516 89.7 5e-13 >seq48073 Length=7537 Score = 134 bits (148), Expect = 1e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| ||||| || | || ||||| ||||| | || || ||||||| ||| || | Sbjct 5587 CGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCG 5528 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || |||| |||||||||| | || ||||| | ||||| || || || |||||||||| Sbjct 5527 --TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTT 5470 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||| || ||||| | | ||||| | | ||||| || | |||| Sbjct 5469 TATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGA 5410 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||||||||| ||||| |||||||| Sbjct 5409 TGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | || | | |||||| || | |||||||| || || | | Sbjct 6751 AAAATTTGCATTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATG 6692 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||||||||||| ||| | || |||| ||||||||| | ||||| ||||||||| Sbjct 6691 TTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGC 6632 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || |||||||||||||| | |||||| || || || | | || || Sbjct 6631 TGGTCGGGTGGGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCG 6572 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||| |||||||| ||||| | |||||| ||||| || ||||| Sbjct 6571 GACGGTTCAACCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 131 bits (144), Expect = 2e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||||| ||| |||| ||| || || || | | || || ||||| || | ||||| Sbjct 6308 TAACGTTTTAACAAAAATTTGCATACCACCGCGGAGACGTAAAACCAAATGGAGGGTAGA 6249 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||| ||||| | ||||||||||| | ||| | || |||| |||||| ||| | || Sbjct 6248 TTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAA 6189 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||| ||||| ||||| || || || ||||||||||| || | || || || |||||| Sbjct 6188 GATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTTGGCTTTGACGTT 6129 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | || || || | |||||||||||||| || || ||||| || Sbjct 6128 TTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAAC 6069 Query 94996 AAAGATCTGCAT 95007 ||| || ||||| Sbjct 6068 AAAAATTTGCAT 6057 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | || | | |||||| || | |||||||| || || | | Sbjct 5839 AAAATTTGCATTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATG 5780 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||||||||||| ||| | || |||| || || ||| | ||||| |||||||| Sbjct 5779 TTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGT 5720 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || || ||||| ||||| | ||| || || || ||| ||| || || Sbjct 5719 TGGTCGGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCG 5660 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||| |||||||| || || | || || || || || ||||| Sbjct 5659 GACGGCTCTACTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 >seq37708 Length=8338 Score = 134 bits (148), Expect = 1e-26 Identities = 164/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| ||||||||||| ||||| |||||||| | |||||||| | || ||| | Sbjct 3286 TCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCG--AAAGCGTTCTA 3343 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || ||||| |||||| | || |||| | ||||||||| ||||| ||||||||| Sbjct 3344 CCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCT 3403 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGT 94968 ||||| | ||||| ||||| ||| ||| || || || || ||||| || | || Sbjct 3404 TTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATC-GCTAGGCTCGACTTCGAGGGT 3462 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || || | || || || ||||||||||| Sbjct 3463 GATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| ||||| | ||||| |||| || ||||||||||| | |||||||||| Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAA 3562 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || ||||| ||| | || || | | |||||| || |||||| Sbjct 3563 AGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGA 3622 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | |||||| ||||||||| ||| |||||| | | || || Sbjct 3623 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 3682 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || || || | |||||||| ||||| ||||| Sbjct 3683 TCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 131 bits (144), Expect = 2e-25 Identities = 192/268 (72%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 94742 GATTACTTTATCGCT-AACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACAC 94800 |||| |||| || | |||| ||| ||| | | || || |||||||||||||| || Sbjct 3919 GATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCATACCGCCTCTCAATCGCAAAAC 3978 Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860 ||| ||||| || ||||| ||||| | ||||| || | ||| | || || || Sbjct 3979 CAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCGTCTTCGAG 4038 Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 ||||| ||| | || ||||| | |||||| || || ||||| || ||||| || | ||| Sbjct 4039 TTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTATCTTGAAT 4098 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTC 94979 ||| |||||||| ||| ||||| || ||| ||||| || | ||||||||||||| Sbjct 4099 TTTGGCCTTGACATTTTCGATCGTGTC-GCTTGGCTCGACTTCGAGTGTGATGGTTTTTC 4157 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || || || ||||| Sbjct 4158 CTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 129 bits (142), Expect = 5e-25 Identities = 182/250 (73%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || ||||||| ||| | |||||||| | || ||||| | Sbjct 4851 TTTTTACGAAAATTTGCATACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTT 4910 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | |||||| || | || ||| | || || || |||||||| | ||||| Sbjct 4911 TTTGGATGTTATAGTCCG--AAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGAT 4968 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | | ||||||||| ||||| || |||||||| || | ||||| || |||||| | Sbjct 4969 GAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTC 5028 Query 94939 GACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 || |||||| || || || || || | ||||||||||| ||||| | ||||| |||| Sbjct 5029 GATAGTGTC-GCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAA 5087 Query 94998 AGATCTGCAT 95007 |||||||||| Sbjct 5088 AGATCTGCAT 5097 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| || | ||||| ||||| |||||||| ||||| | ||||||||| | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || |||||||| ||| ||||||| || | ||| || || ||||| Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||||||||| | ||||| ||||| || ||| |||||| || || ||||| Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTC-GCTAGGCTCGAC 4821 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| || || | ||||| || || || ||||| Sbjct 4822 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||||||| | || || |||| ||| ||||| || || | ||| | Sbjct 3723 TTTGCATACCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGT 3782 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | ||| || || ||||| ||| | ||||| | | ||| |||| Sbjct 3783 AGTCCGAGAGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGAT 3842 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || ||||||||||| | ||||| || || ||| ||| || || || Sbjct 3843 CGGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCGATCGTATC-GCTA 3901 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || | ||||| ||||| || || | || || || || |||||||| Sbjct 3902 GGCTCGACTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 >seq28516 Length=38763 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||||||||||| ||| ||||| |||||||||||||| ||||| | |||||| ||| Sbjct 20551 CTCCTCCTCTCAATCTCAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCG- 20493 Query 94839 TCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || || | ||| || ||||| || || | || || || | |||||| || || Sbjct 20492 -GAAAGGGTACGTCCATCTTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGG 20434 Query 94897 AGGAATACCT 94906 |||||| ||| Sbjct 20433 AGGAATGCCT 20424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447954410028720