Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq53478 192 9e-45 seq33058 168 1e-37 seq9975 161 2e-35 seq8400 156 7e-34 seq21048 150 3e-32 seq45159 147 3e-31 seq3991 138 2e-28 >seq53478 Length=6008 Score = 192 bits (212), Expect = 9e-45 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | |||||| |||||||||||||| |||||||| |||||||| Sbjct 5133 CGCCAAACGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAACCAGCTAT 5074 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| | ||||| || ||||| | | ||||||||| | || ||||| | Sbjct 5073 TCGTCGTTTGGCAAGACGTGGAGGTGTCAAAAGAATTTCTGGATTGATTTACGAAGAAAC 5014 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | || | ||| |||||| | ||| ||| | ||||| || Sbjct 5013 TCGTGGTGTCTTGAAGGTGTTTTTGGAGAACGTTATTCGTGACGCTGTAACTTATACTGA 4954 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||||||||| | ||||| |||| || || |||||||||||||| Sbjct 4953 ACACGCTAAAAGGAAGACTGTCACTGCAATGGACGTCGTATACGCCTTGAAACGTCAAGG 4894 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | || |||||||| ||||| || Sbjct 4893 AAGAACTCTGTACGGTTTTGGCGGTTAAGCT 4863 >seq33058 Length=6225 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| ||||| |||||||| ||||||||||| || | ||||| ||| Sbjct 4609 CGTGATAACATCCAAGGTATCACAAAGCCAGCAATCCGTCGTCTCGCCAGACGTGGAGGA 4668 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| | ||||| ||| |||| ||||| | |||| ||| |||| | || | Sbjct 4669 GTAAAACGTATATCTGGGTTGATCTACGAAGAAACCCGTGGTGTCCTGAAAGTGTTTTTG 4728 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| ||| ||| || |||||||| || || || | ||||| ||||| Sbjct 4729 GAAAACGTTATCCGTGACGCTGTCACTTATACCGAACATGCCAAGAGGAAGACGGTCACA 4788 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| |||| || || ||||| ||||||||||| | | |||||||| ||| || Sbjct 4789 GCGATGGACGTCGTGTACGCGTTGAAGCGTCAAGGCCGAACCTTGTATGGTTTCGGAGGT 4848 Query 16697 TAA 16699 ||| Sbjct 4849 TAA 4851 >seq9975 Length=8851 Score = 161 bits (178), Expect = 2e-35 Identities = 184/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct 1411 CTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATCCGTCGTCTAGCCCGTCGTGGT 1352 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| ||| |||| || || |||| ||||| | ||| | || ||||| | ||| Sbjct 1351 GGTGTCAAACGTATCTCCGGTTTAATCTACGAAGAAACTCGCGGAGTGTTGAAAGTTTTC 1292 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || |||| ||| ||| || || || || ||||| || | || || ||| Sbjct 1291 TTGGAAAATGTAATCCGTGACGCTGTCACTTACACAGAACACGCCAAGAGGAAAACCGTC 1232 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | ||||| || |||||||||| ||| | | | || ||||||||| Sbjct 1231 ACCGCTATGGACGTGGTCTACGCTCTGAAACGTCAGGGCAGAACTCTGTACGGTTTTGGA 1172 Query 16694 AGTTAAT 16700 |||||| Sbjct 1171 GGTTAAT 1165 >seq8400 Length=2258 Score = 156 bits (172), Expect = 7e-34 Identities = 196/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | | | || |||||||||||||| || || || || || || Sbjct 35 CGCCAAGCGTCATCGTAAAGTTTTACGCGATAACATCCAAGGTATTACAAAACCGGCCAT 94 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||| | ||||||||||| || | | || ||||| |||||||||| | Sbjct 95 CCGTCGTTTGGCTAGACGTGGTGGAGTGAAAAGAATATCGGGATTAATCTATGAAGAAAC 154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||| | | | || || | ||| || | ||| || || Sbjct 155 TCGCGGCGTATTGAAAGTCTTCTTGGAAAATGTCATTCGTGACGCCGTTACCTACACTGA 214 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || ||||| || |||||||| | || ||||| |||||||||||||| Sbjct 215 ACACGCGAAAAGAAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAACGTCAAGG 274 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||| ||| |||||| Sbjct 275 AAGAACTTTGTACGGTTTCGGAGGTTAAT 303 >seq21048 Length=34843 Score = 150 bits (166), Expect = 3e-32 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | ||| || |||||||||||||| |||||||| |||||||| Sbjct 8379 CGCCAAGCGTCATCGTAAAGTTCTACGGGATAACATCCAAGGTATCACCAAACCAGCTAT 8320 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | |||||||| || || | | || || ||| | || ||||| | Sbjct 8319 CCGTCGTTTAGCCAGACGTGGTGGCGTGAAAAGAATATCGGGGTTGATTTACGAAGAAAC 8260 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || || || |||| | | | || || | |||||| || ||| ||||| Sbjct 8259 CAGAGGCGTATTAAAAGTCTTTTTGGAAAATGTCATTCGTGATGCAGTCACCTACACCGA 8200 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || || ||||| |||||||| | || || || |||||||| || || Sbjct 8199 ACACGCCAAAAGGAAAACCGTCACAGCCATGGATGTTGTGTACGCTTTGAAACGCCAGGG 8140 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 | | | | || ||||| ||| |||||||||| Sbjct 8139 CAGAACCCTGTACGGTTTCGGAGGTTAATCTTC 8107 >seq45159 Length=12991 Score = 147 bits (162), Expect = 3e-31 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | | || || ||||||||||| || || || ||||| || Sbjct 35 CGCCAAGCGTCATCGTAAAGTGTTACGCGACAACATCCAAGGTATTACAAAACCAGCCAT 94 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||| | ||||||||||| || | | || |||||| | |||||||| | Sbjct 95 CCGTCGTTTGGCTAGACGTGGTGGAGTGAAAAGAATATCGGGATTGATTTATGAAGAAAC 154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||| | | | || || | ||| || | || || || Sbjct 155 TCGCGGCGTATTGAAAGTTTTCTTGGAAAATGTCATTCGTGACGCCGTTACGTACACTGA 214 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || ||||| || |||||||| |||| ||||| |||||||| ||||| Sbjct 215 ACACGCGAAAAGGAAAACTGTTACGGCCATGGATGTCGTTTATGCGTTGAAACGACAAGG 274 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||||||| |||||| Sbjct 275 AAGAACTTTGTACGGTTTTGGAGGTTAAT 303 >seq3991 Length=2126 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | |||||||||||||| || || ||||| || || || Sbjct 1022 CGCCAAACGTCATCGTAAAGTATTGCGAGATAACATCCAGGGTATTACCAAACCCGCAAT 963 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || |||||||| |||||||| ||| | || || ||| |||| ||||| | Sbjct 962 TCGTCGTCTAGCGCGTCGTGGAGGAGTCAAACGTATTTCCGGTTTGATCTACGAAGAAAC 903 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| | || | | | |||||||| |||||| || || ||||| Sbjct 902 CCGTGGCGTACTGAAAGTATTTTTGGAAAACGTTATCCGTGATGCCGTCACTTACACCGA 843 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || || || ||| | ||||| | || || || || ||||| ||||| Sbjct 842 ACACGCCAAAAGGAAAACCGTTACCGCTATGGACGTAGTATACGCCTTAAAACGCCAAGG 783 Query 16672 C 16672 | Sbjct 782 C 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020248320686