Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6338 150 4e-32 >seq6338 Length=18211 Score = 150 bits (166), Expect = 4e-32 Identities = 394/593 (66%), Gaps = 20/593 (3%) Strand=Plus/Plus Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200 ||| | |||||| ||||| ||||||| || ||||||||| || | |||||| ||| Sbjct 15225 TGTTCAAATAGATATGCTAAAGCTAATAATAAGTATATGGGAAAGAAATTTGATAAAAAT 15284 Query 4201 AACCCCGAAAC-ATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGAT 4256 || || | ||| | || | ||| |||| |||||||| ||||| || || Sbjct 15285 AAG---GATTCTATATTT-ATTCAATATTTAGATGCTAATAATTTATATGGTTGGGCAAT 15340 Query 4257 GAGTATGTCTTTACCAAAGGGTAAATTTGAATGG----GTT--GAAAATGTAGATGATGT 4310 | || | ||||||| | ||| ||||||||| || ||| || | |||| | Sbjct 15341 GTCTAAATATTTACCATATGGTGGGTTTGAATGGAGAAGTCCAGAATATTTTAATGAAGA 15400 Query 4311 A-GA--TCAGTTTTTCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACA 4367 | || || | || |||||| ||| | || || | ||||||||||| || | Sbjct 15401 AAGAATTCTAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTAGATTTAAA 15460 Query 4368 CTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTTGT 4427 ||||| | | |||||||| ||| |||| |||||| || |||||| || || Sbjct 15461 ATATCCCAAAGAATTACATGACAAACATTCAGATTTACCTTATTGTCCAGAAAAT---GT 15517 Query 4428 ACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGT 4487 | || ||| | || |||| | ||||| | || ||||| || |||||||| Sbjct 15518 AATTAATGATAGTCAATTACCAAAATTATTTACAACATTATATGATAAGAAGAATTATGT 15577 Query 4488 TATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACA 4547 | |||| ||| ||| | || ||| | | || || ||| | | ||||| || Sbjct 15578 TCTTCATTATTTGAATCTTAAGCAAGCTCTGAATGCTGGATTAAAATTAGAAAAAATTCA 15637 Query 4548 CCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGC 4607 ||| | |||||||| || || || ||| | ||| |||||| || || ||||| Sbjct 15638 TAGAGTTATAAAATTTGATCAGTCTGATTGGATGAAAGTATATATTGAAAAGAATACAAA 15697 Query 4608 ATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGC 4667 || || || |||||||||||| || |||||| |||||| |||| | ||||||||| | Sbjct 15698 ATTAAGACAAGAAGCTAAGAATGAATTTGAAAAAGACTTTTTTAAACTTATGAATAATTC 15757 Query 4668 GGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720 |||||||||| ||| ||| |||||| ||||| || |||||| | |||| Sbjct 15758 TGTTTTTGGAAGGACAATGATGAATGTGAGAAAACATGTTGATATAAAATTAA 15810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97904474568508