Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq39349 107 2e-18 seq27620 102 9e-17 >seq39349 Length=17693 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| || ||| ||||||||| ||| || || | ||| ||||||| || || |||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||| | |||||| ||| ||||||||||| || || || |||||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 ||| | || || || | || | | | |||| ||||||| || ||||| | || Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 21678 CCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 | ||| ||| | |||| || || ||||| || || || ||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| ||||| || ||||||| |||||| || | ||| ||||| ||||||||| |||| || Sbjct 11319 ACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGAAACCCGTAAAAAAATCTGGC 11260 Query 21826 CTCTGAACATTGAACCTC--GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 || | ||| ||||| |||| ||| |||| ||||||||||||| || || || Sbjct 11259 TTCGGGGATTTGCACCTCTTGGAAAAAA--CGTTCGACCAAGTTTTCATTGACAATACCG 11202 Query 21884 TCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT 21943 ||| ||| ||||||||||| || | || | || || | || ||| | | | | | Sbjct 11201 TCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTTCTTTCTTCGGGTTTCAGT 11142 Query 21944 TTTTTCCAATCTAATAAATC 21963 |||| ||||||| ||||| Sbjct 11141 TTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 102 bits (112), Expect = 9e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| || || ||| | ||||||| || || | || ||||||| |||||||||| Sbjct 18280 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTT 18221 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||| ||||| | ||||| ||| ||||||||||| || || ||||||||||| | Sbjct 18220 TAAGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACG 18161 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 ||| | |||||| | | |||| || ||| ||||||||| ||||| | | Sbjct 18160 CAATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCG 18101 Query 21678 CCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 | || |||||| | |||| ||||| ||||| || || || ||| Sbjct 18100 CTTTCTTCTTT-ACACAAGGCATTGTTTCAATGGCATTGAACAGA 18057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || ||||| || ||||||| ||||||||| | || |||||||||||||| |||| || Sbjct 17948 CTGTACATCTCGGAATGTACATTTTCTATGGTGATTTGAAATCCGTAAAAGAATCTGGCT 17889 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| | |||||| || | | || || | | || |||||||| || || |||||| Sbjct 17888 TCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAAATTTTCATTGACAATACCATCA 17829 Query 21887 CTGGCGGCAAAAAATGCCAA 21906 || ||||||||||| || Sbjct 17828 GATGCCGCAAAAAATGCTAA 17809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 |||||||| || ||||| ||| |||| || | || |||| | ||| |||| Sbjct 18794 TAAAAATCGGCGTCTAACTTGAATTCATTTTCGCCACTTGGGAACATTACTCCACTTTTC 18735 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 | || || | ||||||||| ||||| ||||| || || || | ||| || ||| |||| Sbjct 18734 TTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATTCAAAGAAATATTTTCC 18675 Query 21248 ATAAAATCAAATGGATTTTCAGATTT 21273 |||||||||||||||||||| || || Sbjct 18674 ATAAAATCAAATGGATTTTCGGAGTT 18649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531501196226480