Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq39349 150 2e-31 seq27620 138 1e-27 seq4462 138 1e-27 seq3858 116 5e-21 >seq39349 Length=17693 Score = 150 bits (166), Expect = 2e-31 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 ||||||||| |||| |||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || || |||||||||||| || ||||| || |||||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 33448 ATAAGTCTCTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | |||||||||| || ||| ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 || |||| ||||||||||| ||||| || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 145 bits (160), Expect = 9e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | |||||| || ||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||| ||||| ||| |||| || |||| || || || ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 |||| |||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || | | |||| || ||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 138 bits (152), Expect = 1e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 |||||||| || ||||| || || || ||||| ||||||||||| | ||||||| Sbjct 18278 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTA 18219 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| ||||| | ||| || ||| |||||||| || ||||| || |||||||| ||| Sbjct 18218 AGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCA 18159 Query 33448 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | | || || || ||||| ||| |||||| || ||||| || || Sbjct 18158 ATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCT 18099 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 ||||| |||||||||||||| ||||| |||||||| || ||| Sbjct 18098 TTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAGA 18057 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||||||||| || |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | ||||||||||| || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || | |||||| || ||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||||||||| || || ||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | || || | ||| | || | |||||||||||| || || || || ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 33252 AGATCTAACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 ||| |||||| |||||||| || | ||||||||||||||||||||||| Sbjct 18428 TTCGGTAA---TTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGC 18372 Query 33309 GAAATCGCAGTGCAGACCCT 33328 |||||| || | ||||| Sbjct 18371 AAAATCGGTATGTAAACCCT 18352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 32999 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTT 33058 |||| ||||| |||| | |||||| || || | ||| ||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 33059 CCAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| || ||||||||||| |||||||| ||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq4462 Length=45351 Score = 138 bits (152), Expect = 1e-27 Identities = 232/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 ||||||| ||||| | || ||| || | | |||||| |||||||| | ||||| Sbjct 16558 ATACAATTTATCGAAATTTTCGCCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACA 16617 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||| || ||| | | ||| || | || ||| ||||||| |||||| ||||| || Sbjct 16618 CATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAG 16677 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || |||| ||| || | | | ||| || || || | || ||| ||| || | Sbjct 16678 CGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTACCAGAGTTTTTTCGAAGCTCTAA 16737 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 ||| | | |||||| |||||||| ||||||||||| | || | | | || || | ||| Sbjct 16738 GAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTT 16797 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| ||||| ||||| | ||||| || ||||||||||| || | | ||| || | | Sbjct 16798 GTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAG 16857 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 ||| ||||||| ||| || || || | || ||||| Sbjct 16858 ACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||||||||||||||| | || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62211 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 62553 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 62612 || |||||| | ||||||| || || || || || || || || ||| |||||| Sbjct 15771 CCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCA 15830 Query 62613 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 62672 ||||| ||||| || |||||||||||||||||||| || |||| ||||||| ||| Sbjct 15831 CAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGG 15890 Query 62673 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 | || | || || ||||| | | | ||||| ||| ||||||||||||| | Sbjct 15891 GATTGCTCACTCTCGAATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATA 15950 Query 62733 CCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 || || || || || ||||| ||| ||| || Sbjct 15951 CCTATTCCAATCGGCCTATGCCTCAGATTCGA 15982 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAAGTAGA 63668 |||| | ||||| ||||||||||||||||| || ||||| || ||||| || | || | Sbjct 17114 AGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAA--ATATTTCAACGACATTAAA 17171 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 || || || ||||| || || || ||||| ||||| || || | || ||||| Sbjct 17172 TTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTCGCATC 17231 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 |||||||| || || | ||| || || | ||| ||||| || || || ||| | || Sbjct 17232 AACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATCTCTCT 17291 Query 63789 AAAGT 63793 || || Sbjct 17292 AAGGT 17296 >seq3858 Length=10210 Score = 116 bits (128), Expect = 5e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 63624 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63683 || || ||||| || ||||| ||||| || |||| || | | || ||||| || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 63684 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742 |||| ||| |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 63743 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| || | ||| ||| |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || || |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62509 ||| || | ||||||| | | ||||| ||||| | | |||||| ||| Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCA 7750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || || | |||||| ||||| || |||| ||| || || || || | || |||| | Sbjct 5729 CTGAACATTTTTTTGGTTTCTTTATGTAAATTGGAAACAGCAATACGAGCAGCTAACACA 5670 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 || |||||||||||| | ||||| || || || ||||||| || ||| | |||||| Sbjct 5669 GCGTAATCCGGATGTCGAGTAGTCATAGAAGCAGCGGTTTCGGCGGCTAGATTATCCAAT 5610 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 || | ||||||||| ||| | ||| ||| || || ||||| || |||| Sbjct 5609 TCCATCGTTGTTACACCAGGAAATAAACCTCTGATTACTTTCATTGCGATTT 5558 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 |||||||| || | | ||||| | || || || || | |||||||| || ||||| Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 |||||||||||| ||||| ||| | || || ||||| ||||| | ||| | || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGC 63067 ||||||||||| || || || | ||| || Sbjct 6996 CCCAGTTTCAATTTGCGAGTCCAAAATTGC 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622479195342320