Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4462 122 2e-22 >seq4462 Length=45351 Score = 122 bits (134), Expect = 2e-22 Identities = 242/348 (70%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||||||||| || || |||||||| || |||||| | || ||||| || || |||||| Sbjct 38500 AGGTGATCTTGGTCCTGTTTACGGGTTCCAATGGAGACATTTTGGAGCCGAGTACAAAGA 38559 Query 111548 CATGCACGACTCAT-ATG-ATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605 |||||| ||| || || | || ||| | | |||||| | || || ||||| || Sbjct 38560 TATGCAC-ACTGATTATACAAACAAAGGCATC-GATCAACTTCAAAACGTCATAGACACG 38617 Query 111606 ATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 ||||| || || ||| || | | | || || | | || ||||| || | || || Sbjct 38618 ATTAAAAATAATCCCGACGA-TAGAAGAATAATCCTATGCGCTTGGAATCCCATTGATTT 38676 Query 111665 GGAAAAAATGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 |||||||| | || || ||||| | | |||| ||||||| | | | || Sbjct 38677 ACCTAAAATGGCCTTACCTCCGTGTCACTGCTTGGTGC-AGTTTTACGCAGTTAATGGCG 38735 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 || || || ||||||||||| |||||||| ||||| ||||||||||| || || || | Sbjct 38736 AACTATCGTGTCAAATGTATCAACGATCTGCCGATATGGGTCTTGGTGTACCTTTCAACA 38795 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATC 111831 | || |||||| | || || || | | || |||||| ||||||||| Sbjct 38796 TCGCCAGTTACTCTCTGCTCACGTATATGATTGCTCATGTTACAAATC 38843 Score = 93.3 bits (102), Expect = 1e-13 Identities = 238/353 (67%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 ||||| ||||| || |||| || | |||||| ||| | ||||| || || || ||| Sbjct 16989 ATCGAAGGTATATTCCACACTCTAACGAATTGCGCTATGATTTCTAAATCAGCTGGTGGA 16930 Query 363697 ATTGGTGTATCGATCCACAATGT-TCGT--GCACAGAACAGTTACATTCGCGGCACAGGG 363753 ||||| | || ||| || || | ||| ||||| |||||| || ||| Sbjct 16929 GTTGGTTTGCATAT--ACATTGCATCAGAGGTACA-AACAGCTACATTGCTGGGACAAAC 16873 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 || || ||||| || || || |||||||| || | | | || || || || || ||| Sbjct 16872 GGTGTATCAAATGGTCTCGTGCCGATGCTTCGGGTATATAATAACACAGCCAGATATGTC 16813 Query 363814 GACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATG 363871 || || || || | |||| | || || || || | || | || ||| ||| Sbjct 16812 GATCAAGGAGGCAACAAAAGACCC--GGCGCTTTCGCAGTTTACTTGGAACCTTGGCATT 16755 Query 363872 CCGATATTTTTGAGTTTCTT-GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 ||||||||||||| |||||| ||||| || |||||| | || ||||| |||| || || Sbjct 16754 CCGATATTTTTGA-TTTCTTAGAGCTTCGAAAAAACTCTGGTAAAGAAGAATCTCGCGCT 16696 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 | ||| | ||||| || || ||| | |||| | ||||||| ||||| || Sbjct 16695 AGGGATTTATTCTACGCGCTATGGATCCCTGATGAGTTTATGAGACGCGTTGA 16643 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 364115 AGAAG-CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTG 364173 ||||| || ||||| || || | ||||| || || || |||||||| || || ||| || Sbjct 16441 AGAAGTCTTTGGTTCGCTATATTAGATTCTCAAATAGAAACAGGAACGCCTTACATGCTG 16382 Query 364174 TACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AG 364232 ||||||||| | || || || || ||||| || ||| ||||||| || | ||| || || Sbjct 16381 TACAAAGATGCCTGTAATCGTAAATCCAATCAACAGAACCTTGGAACTA-TCAAAAGTAG 16323 Query 364233 CAACCTATGTACCGAGAT 364250 |||| | |||||||| || Sbjct 16322 CAACTTGTGTACCGAAAT 16305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302349943599764