Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq48073 150 2e-31 seq37708 149 5e-31 seq8389 98.7 9e-16 seq28516 95.1 1e-14 >seq48073 Length=7537 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| || ||| | ||||| | ||||| ||| | | Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || ||| |||||| ||||| |||||||| || ||||| ||| Sbjct 5661 GATACCATCGAGAACGTTAAAGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCAA 5720 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| |||||| | ||||| | | ||| | |||||||||||| Sbjct 5721 CAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 5780 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 ||||| ||||||||||| ||||||| ||| | || || Sbjct 5781 ATTCAGAAAGAATCTACGCTTCATTTGGTGCTCAGGTT 5818 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || |||||| | || ||| | ||||| || | | Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| || |||||||| || || ||||| || Sbjct 6117 GACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAG 6176 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || ||| || || | ||||| | | | | ||||||||||||| Sbjct 6177 CAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAAT 6236 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||||||||||||||| | ||||| || ||| Sbjct 6237 ATTCAAAAAGAATCTACCCTCCATTTGGTTTTA 6269 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| || ||||| ||| | ||||| | || || || | Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| ||||| || | || ||| || ||| ||||||||||| || || ||||| || Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 6631 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || ||| |||| | || ||| || ||| | ||||| | | ||| | ||||||||||| Sbjct 6632 GCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 6691 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 |||||| ||||||||||| | ||||| ||| | || || Sbjct 6692 CATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTT 6730 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||| || ||| | |||||| | ||||| || | Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || ||| || ||||||||||| || ||||| || Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | |||| || ||| || || | ||||| | | ||| | |||||||| ||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||| || || |||| ||||| || Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTT 6496 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| | |||||||| | || ||| | |||||||| | Sbjct 5369 CAAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACC 5428 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||| || | |||||| || ||| || |||||||| || || ||||| Sbjct 5429 GTCCGACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGA 5488 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | | |||| || ||| || || | ||||| | | | | ||||| || Sbjct 5489 CCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACTA 5548 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||||||||| || ||||||| || || Sbjct 5549 CAATATTCAAAAAGAATCCACCCTTCATTTGGTCTT 5584 >seq37708 Length=8338 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || || || ||| |||||||| ||||||||||| | | | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || || |||||||||||||| |||||||| ||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | |||||| || |||||||||| || | | | ||||||||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||||||||| | ||||| || | | |||||||| || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| || ||||| ||| | || ||| ||||||| ||| | Sbjct 5100 AAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCCG 5041 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||| ||||| | |||||| || || || ||||||||||| ||||||||| Sbjct 5040 AGCGACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGAT 4981 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | || || | || || || ||||||||||| | |||| | | || ||| Sbjct 4980 CAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTAT 4921 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||||||||| || |||| || || | || ||||||| || Sbjct 4920 AACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGG 4871 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || || ||| |||||||| ||||||| ||| | | | Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || ||| || ||||| || || |||||||| || Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||| | ||||| | |||| || |||||| ||| Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||| || || | ||||| ||| | ||||||| ||||| Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGG 4187 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || || || | || || | ||||| ||| ||| Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || ||| || ||||| || || |||||||| || Sbjct 3669 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 3610 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || |||||| ||||||||||||| | | | | | |||||||||| Sbjct 3609 CAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAAC 3550 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || | ||||| || | |||| ||||| || Sbjct 3549 ATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGG 3503 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| || ||||| || ||| | || || ||||||||||| | | | Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| || || ||||||||||| || || ||||||||| Sbjct 3897 GATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAA 3838 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || ||||||||||||| |||| || || || ||| Sbjct 3837 CAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAAC 3778 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || | |||||||| | |||||||||| || Sbjct 3777 ATCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGG 3731 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || || |||||| | || || ||||||||||| | | | Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || ||| || ||||| || || || ||||| || Sbjct 4125 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAG 4066 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | |||| || ||| || ||||||||||| | || | || || ||||| Sbjct 4065 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAAT 4006 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | ||||| || || |||||||||| || Sbjct 4005 ATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGG 3959 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | || ||| ||||||||||| | | | Sbjct 3501 ATGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGC 3442 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || || || ||||||||||| || ||||| ||||| Sbjct 3441 GATACGATCGAAAACGTTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 3382 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| ||||| |||||||||| |||| | |||||||| Sbjct 3381 CAACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAAT 3322 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || ||||| Sbjct 3321 ATTCAAAAGGAGTCTAC 3305 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || || | ||||||||| | | Sbjct 4641 ATGCAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGT 4582 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || ||| || || |||||||| || |||||||| Sbjct 4581 GACACGATTGAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGCATTCCGCCCGATCAG 4522 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || || |||||||||| |||| | | ||||| ||| Sbjct 4521 CAACGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTACAAC 4462 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| || |||| || || | |||| ||||| || Sbjct 4461 ATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGCGG 4415 >seq8389 Length=28122 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 |||||| ||||| |||||||| | |||||| || || || ||||| ||||||| || Sbjct 12831 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAG 12890 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | ||||| ||||||||||||||||| || | |||||||| ||| |||| || Sbjct 12891 AACTCTTTCTGATTACAACATTCAAAAAGAATCGACGTTGCATTTAGTATTACGATTAAG 12950 Query 24212 AGGAGGA 24218 ||||||| Sbjct 12951 AGGAGGA 12957 >seq28516 Length=38763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 |||||| ||||| || || || | |||||| || || ||||| |||||||||| | Sbjct 20424 AGGCATTCCTCCTGACCAGCAACGTTTGATTTTCGCTGGTAAGCAGCTCGAAGATGGACG 20483 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 | | | ||| |||||||| |||||||||||||| | ||||| || || |||||||| Sbjct 20484 TACCCTTTCCGACTATAACATCCAAAAAGAATCTACTTTGCATTTGGTATTGAGATTGAG 20543 Query 24212 AGGAGGA 24218 ||||||| Sbjct 20544 AGGAGGA 20550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429621074835810