Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq37708 125 6e-24 seq48073 118 9e-22 >seq37708 Length=8338 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| | || || ||||| |||||| ||||| ||| | ||| Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | ||||| |||||| |||||||| || | || || ||| Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||||| ||||| | | ||| | ||||||| ||| Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||| ||| ||||| ||||| | ||||| | ||||| Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGG 4187 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||||||||| || ||||| |||||| | || || |||||||| ||| ||||| ||| | Sbjct 5101 AAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCC 5042 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||||||| | | | | || ||| ||||| |||||||||||| |||| || Sbjct 5041 GAGCGACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGA 4982 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||| | || || | || || |||||| | ||||| | | |||| | | || || Sbjct 4981 TCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTA 4922 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 |||||| |||||||| || || Sbjct 4921 TAACATCCAAAAAGAATCAAC 4901 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || || ||||| |||||| ||||| ||| | ||| Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| | | | | || || ||||| || ||||||||| |||| || || Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| |||||||| | ||||||| | ||| || |||||||||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||| | ||| |||| | | ||| |||| || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || ||||||||||| || ||||| ||| | ||| Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || |||||| |||||||| || | ||| || ||| Sbjct 4125 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAG 4066 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| || || |||||| | ||||| | | || | | || ||||| Sbjct 4065 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAAT 4006 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || | ||| |||| ||| ||||| |||| || Sbjct 4005 ATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGG 3959 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| | || || || ||||| || | ||| ||| |||| Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || |||||| |||||||| || | || || ||| Sbjct 3669 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 3610 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || ||||||||| | ||||||| | ||| | ||||||||||| Sbjct 3609 CAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAAC 3550 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || || || | ||| |||| | |||| |||| || Sbjct 3549 ATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGG 3503 >seq48073 Length=7537 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| | || || ||||||||||| | || || | Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | | || ||| |||||| || |||||||| |||| || || Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 6631 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | || || |||||||| ||||| | | ||| || ||||||||| Sbjct 6632 GCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 6691 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| ||||| ||||| ||||| ||||| | || || || || |||| Sbjct 6692 CATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTTACGTGGTGGAA 6741 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||||||||| ||||||||||| ||| | ||| ||| | | Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| || || ||||||||||| |||| || ||| Sbjct 6117 GACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAG 6176 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | || || ||||| || ||||| | | || | ||||||||| Sbjct 6177 CAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAAT 6236 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||||||||||| ||||| | ||| |||| || Sbjct 6237 ATTCAAAAAGAATCTACCCTCCATTTGGTTTT 6268 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| |||||| | || || |||||||||||| | ||| || | Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| |||||| |||||||||||| | || || ||| Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| || || ||||| || ||||| | | ||| || |||||| ||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||||||| || | || | || ||| | | ||||| |||| Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCGTCTCCGAGGTGGAA 6513 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| ||| | || || ||||||||||| | ||| ||| | | Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | || ||| || ||| || || |||||| |||| || || Sbjct 5661 GATACCATCGAGAACGTTAAAGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCAA 5720 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | || || || ||||| ||||| | | ||| || |||||||||| Sbjct 5721 CAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 5780 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| ||||| | ||| ||||| | || || || || |||| Sbjct 5781 ATTCAGAAAGAATCTACGCTTCATTTGGTGCTCAGGTTACGTGGTGGAA 5829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 || || ||||| |||||||| ||||| || || ||||| ||||| ||| | ||| || Sbjct 5367 TTCAAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAA 5426 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | |||||| ||| | | || ||| |||||| ||||||||||| |||| Sbjct 5427 CCGTCCGACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCC 5486 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 || ||||| | | |||| || || ||||| || ||||| | || || ||| Sbjct 5487 GACCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGAC 5546 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || || ||||||||||| || || | ||| |||| ||| Sbjct 5547 TACAATATTCAAAAAGAATCCACCCTTCATTTGGTCTTG 5585 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| | || ||||| || ||||| | || || | Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| | | | | || || |||||| ||||||||||| |||| ||| || Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCA 6859 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || ||||| || ||||| | || || |||||| || Sbjct 6860 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAA 6919 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||||||||||||||| || | ||| |||| || Sbjct 6920 CATTCAAAAAGAGTCGACCCTTCATTTGGTTTT 6952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425032438444240