Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq37708 100 2e-16 seq48073 95.1 1e-14 >seq37708 Length=8338 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || || ||||| ||||| ||||| | | |||| | |||| Sbjct 4886 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCT 4945 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || | || || || || || || ||| | ||| ||||| || Sbjct 4946 TCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCT 5005 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | || || | | | |||||||| ||||| ||| | |||||||||| Sbjct 5006 TGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTT 5065 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || |||| |||||| ||||| ||||||||||| Sbjct 5066 TTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| | || ||||| ||||| |||||||| |||| | ||| | |||| Sbjct 4202 AGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCT 4261 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| || || |||| || || || ||||| ||| | |||||||| || Sbjct 4262 TCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 4321 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||||| ||||| ||| | ||| || ||| Sbjct 4322 TGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTT 4381 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| ||||| || || || ||||| Sbjct 4382 TTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| |||| ||| ||||||||||| || || || || | Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || || || || |||| || || || || ||| ||| Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| |||| | ||| || | | | || |||| ||||| | Sbjct 3395 ATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACT 3454 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || |||| ||| ||||| || |||||||| Sbjct 3455 TCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 >seq48073 Length=7537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| ||| || ||||| || ||||| || ||||||||| | Sbjct 5599 CCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTC 5540 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| ||||| ||||| || || |||| | |||||| ||||| || Sbjct 5539 AAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGG 5480 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || ||||| ||| || || | | | |||||| || || Sbjct 5479 ATACCTTCTTTATCTTGAATTTTAGCT--TTGACATTTTCAATGGTGTCGGACGGTTCGA 5422 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||||||||| ||||| || || ||||| |||||||||||||| ||| Sbjct 5421 CTTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTTG 5369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404791275824980