Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq39349 159 4e-34 seq27620 136 5e-27 seq4462 132 6e-26 seq3858 122 1e-22 >seq39349 Length=17693 Score = 159 bits (176), Expect = 4e-34 Identities = 170/222 (77%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 ||||||||| ||||||||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||||||||| | |||||| ||||||||||||||| ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 32805 ATAAGTCTCTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 32861 || | |||||||||| || ||| ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || |||| ||||||||||| || || || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 140 bits (154), Expect = 4e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | ||| || |||||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||| ||||| || |||| || |||| || || || ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | || |||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 || | | |||| || ||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 136 bits (150), Expect = 5e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||||||||||||| ||| |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 ||||||||||||| || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 33101 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 || | |||||| || ||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 129 bits (142), Expect = 7e-25 Identities = 146/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || ||||| ||||||||||| | |||||||||||| ||||| | ||||| ||| Sbjct 18251 AAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATCGCAGCAAAGCTTCCG 18192 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 ||||||||||| ||||| || || ||||| ||||| | | || || || ||||| Sbjct 18191 GAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCAGCAAAAGTAGCGCTT 18132 Query 32831 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 ||| |||||| || ||||| || || ||||| ||||||||||||||||| || Sbjct 18131 TGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACACAAGGCATTGTTTCA 18072 Query 32889 ATAGCATTAAAGAGA 32903 || ||||| || ||| Sbjct 18071 ATGGCATTGAACAGA 18057 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||||||||| || |||||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | || || | ||| | || | |||||||||||| || || ||||| ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 32609 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 | | | ||| |||||||| | | ||||||||||||||||||||||| || Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 32669 ATCGCAGTGTAGACCCT 32685 |||| |||| ||||| Sbjct 18368 ATCGGTATGTAAACCCT 18352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 32356 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTT 32415 |||| ||||| |||| | |||||| || || | ||| ||||| ||||| |||||||| | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 32416 CTAATGATATATTTTCCATGAAATCGAATGGATT 32449 || || ||||||||||| ||||| |||||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq4462 Length=45351 Score = 132 bits (146), Expect = 6e-26 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 ||||||| ||||| | || ||| || | | || ||| |||||||| | ||||| Sbjct 16558 ATACAATTTATCGAAATTTTCGCCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACA 16617 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| || ||| | | ||| || | || ||| ||||||| |||||| ||||| || Sbjct 16618 CATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAG 16677 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || |||| ||| || | | | ||| || || || | || ||| ||| || | Sbjct 16678 CGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTACCAGAGTTTTTTCGAAGCTCTAA 16737 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 ||| | | |||||| |||||||| ||||||||||| | || | | | || || | ||| Sbjct 16738 GAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTT 16797 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 ||| ||||| ||||| | ||||| || ||||||||||| || | | ||| || | | Sbjct 16798 GTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAG 16857 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 |||||| ||| ||| || ||||| | || ||||| Sbjct 16858 ACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||||||||||||||| | || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| |||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 62408 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 62467 || |||||| | ||||||| || || || || || || || || ||| |||||| Sbjct 15771 CCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCA 15830 Query 62468 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGC 62527 ||||| ||||| || |||||||||||||||||||| || |||| ||||||| ||| Sbjct 15831 CAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGG 15890 Query 62528 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 62587 | || | || || ||||| | | | ||||| ||| ||||||||||||| | Sbjct 15891 GATTGCTCACTCTCGAATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATA 15950 Query 62588 CCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 || || || || || ||||| ||| ||| || Sbjct 15951 CCTATTCCAATCGGCCTATGCCTCAGATTCGA 15982 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA--GAAAGTAGA 63523 |||| | ||||| ||||||||||||||||| || ||||| || ||||| || | || | Sbjct 17114 AGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAA--ATATTTCAACGACATTAAA 17171 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63583 || || || ||||| || || || ||||| ||||| || || | || ||||| Sbjct 17172 TTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTCGCATC 17231 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 |||||||| || || | ||| || || | ||| ||||| || || || ||| | || Sbjct 17232 AACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATCTCTCT 17291 Query 63644 AAAGT 63648 || || Sbjct 17292 AAGGT 17296 >seq3858 Length=10210 Score = 122 bits (134), Expect = 1e-22 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 63479 AATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63538 || || ||||| || ||||||||||| || |||| || | | || ||||| || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 63539 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597 |||| ||| |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 63598 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||||| || | ||| ||| |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 || || | |||||| |||||||| |||| ||| || || || || | ||| |||| | Sbjct 5729 CTGAACATTTTTTTGGTTTCTTTATGTAAATTGGAAACAGCAATACGAGCAGCTAACACA 5670 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 || |||||||||||| | ||||| || || || ||||||| || ||| | |||||| Sbjct 5669 GCGTAATCCGGATGTCGAGTAGTCATAGAAGCAGCGGTTTCGGCGGCTAGATTATCCAAT 5610 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 || | ||||||||||||| | ||| ||| ||| || ||||| || |||| Sbjct 5609 TCCATCGTTGTTACACCAGGAAATAAACCTCTGATTACTTTCATTGCGATTT 5558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || || |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 ||| || | ||||||| | | ||||| ||||| | | |||||| ||| Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCA 7750 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62773 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 62832 |||||||| || | | ||||| | || || || || | |||||||| || || || Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 62833 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 62892 |||||||||||| ||||| ||| | || || ||||| ||||| | ||| | || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 62893 ACCAGTTTCAATCTGAGATTCTATAATCGC 62922 ||||||||||| || || || | ||| || Sbjct 6996 CCCAGTTTCAATTTGCGAGTCCAAAATTGC 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633155968119200