Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq48073 161 9e-35 seq37708 140 3e-28 seq8389 95.1 1e-14 seq15454 82.4 7e-11 >seq48073 Length=7537 Score = 161 bits (178), Expect = 9e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| |||||||| |||||| |||| || | || || || |||| Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || |||| || |||| ||| ||||||||||| || ||||| |||| Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCACCCGACC 6630 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || || ||||| |||||||| ||||| | || ||| || ||||||| | Sbjct 6631 AGCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATA 6690 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| |||||||| ||||||||||| ||||| ||| || | || |||| Sbjct 6691 ACATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTTACGTGGTGGAA 6741 Score = 158 bits (174), Expect = 1e-33 Identities = 164/213 (77%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || ||||||||| |||| || | ||||| || ||||| Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || |||||||| |||||||| || Sbjct 6345 GATACGATTGAAAACGTCA---AAGCTAAAATTCAG-GATAAAGAAGGCATTCCACCCGA 6400 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | ||||| ||||| ||||| || ||||| | || ||| || ||||||| Sbjct 6401 CCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTA 6460 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| ||||||||||| || || || || ||||| Sbjct 6461 CAACATTCAAAAAGAGTCAACCCTTCACTTAGT 6493 Score = 149 bits (164), Expect = 5e-31 Identities = 162/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || ||||||| | ||||| || |||| Sbjct 5373 ATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACCGTCC 5432 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||| ||| || |||||||| || ||||| || Sbjct 5433 GACACCATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCCGA 5488 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | ||||| ||||| ||||| || ||||| | || ||| || |||| || Sbjct 5489 CCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACTA 5548 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||||||| || ||||| || Sbjct 5549 CAATATTCAAAAAGAATCCACCCTTCATTTGGT 5581 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||||||||| || | || || | || || || |||| Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||||||| |||| || |||| ||| || |||||||| || || ||||||| Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCA-GGATAAAGAAGGAATCCCGCCTGACC 6858 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| || ||||| || ||||| | ||| ||| || ||||||||| Sbjct 6859 AGCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACA 6918 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||||||||| || || || ||||| || || | || | ||||| Sbjct 6919 ACATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGG 6967 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||||||||| || | || || | || || || | || Sbjct 5828 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATC 5887 Query 25058 TGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || |||| |||| ||| || |||||||| || ||||| |||| Sbjct 5888 AGATACCATCGAAAACGTGAAAGCGAAAATTCA-AGATAAAGAAGGTATCCCACCCGACC 5946 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| || ||||||||||||||||| | || || || |||| |||| Sbjct 5947 AGCAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACA 6006 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| || ||||||||||| || |||||||| Sbjct 6007 ATATCCAGAAAGAATCCACTCTTCATTTAGT 6037 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | ||||| ||| ||||||| | |||||||| |||| Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | || || |||||||| || ||||| || Sbjct 6117 GACACCATCGAAAACGTCA---AAGCCAAGATACAA-GATAAAGAAGGTATCCCACCCGA 6172 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || ||||| ||||| || ||||| | || ||| | ||||||| Sbjct 6173 CCAGCAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTA 6232 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || || ||||| || Sbjct 6233 TAATATTCAAAAAGAATCTACCCTCCATTTGGT 6265 >seq37708 Length=8338 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || |||||||| ||| | || || ||||||| ||| | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| |||||| ||||||||||| || || || |||||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||||||||| | ||||||| | || || |||||| ||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| ||| | ||||| || || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACT 4658 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| || ||||||| | ||||| ||| | | Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || |||| ||| || ||||| || ||||| || || Sbjct 3669 GACACCATCGAAAACGTCA---AGGCCAAAATTCAA-GATAAAGAGGGAATTCCTCCCGA 3614 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || ||||||| |||||||||||| | ||||||| || || | |||||| Sbjct 3613 CCAGCAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTA 3554 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| |||||||| || ||||| || || | ||||||| || Sbjct 3553 TAACATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGG 3503 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| || ||||||||| | |||||| ||||||| ||| | Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| |||| |||||| ||||||||||| || ||||| || ||| Sbjct 3897 GATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAA 3838 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||| | ||||||| | ||| | || ||||| Sbjct 3837 CAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAAC 3778 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || |||||||| || Sbjct 3777 ATCCAGAAAGAATCCACTCTGCATTTAGTTCT 3746 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || ||||| || ||| |||||||| ||||||| ||| | Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || |||| ||| || ||||| || ||||| || || Sbjct 4125 GACACGATCGAAAATGTCA---AGGCCAAAATTCAA-GATAAAGAGGGAATTCCCCCCGA 4070 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | ||||| ||||| |||||| | ||||| | | | ||| | || || Sbjct 4069 CCAGCAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTA 4010 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| ||| | ||||| || Sbjct 4009 TAATATTCAAAAAGAATCGACGTTGCATTTGGT 3977 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| |||||| || ||||| || || ||||| |||||| ||||||| ||||||| | Sbjct 5105 ACAGAAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAG 5046 Query 25051 AGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || || ||||||||||| |||| |||| |||||| || |||||||| || Sbjct 5045 AGCCGAGCGACACTATCGAAAACGTCA---AAGC-GAAAATCCAAGATAAAGAAGGCATC 4990 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 || || || || || || | || || || || |||||| | ||||| | | | || | Sbjct 4989 CCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTT 4930 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||||||||| || || || || || || | || ||||| || Sbjct 4929 TCGGACTATAACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGG 4871 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| ||||| ||||| | |||||| | ||||| ||| | | Sbjct 4641 ATGCAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGT 4582 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || |||| ||| || || ||||| ||||| || || Sbjct 4581 GACACGATTGAAAATGTCA---AGGCGAAAATTCAA-GATAAGGAAGGCATTCCGCCCGA 4526 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || || ||||| ||||| | ||||||| | | || | ||||| Sbjct 4525 TCAGCAACGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTA 4466 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||||||||| || || || || || || | ||||||| || Sbjct 4465 CAACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGCGG 4415 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| |||||| ||||||| ||||||| ||| | Sbjct 3501 ATGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGC 3442 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| |||||| ||||||||||| || || || || || Sbjct 3441 GATACGATCGAAAACGTTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 3382 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||| || || | ||||||| | | || | ||||| ||| Sbjct 3381 CAACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAAT 3322 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||| || || ||| | || || || Sbjct 3321 ATTCAAAAGGAGTCTACGTTGCACTTGGT 3293 >seq8389 Length=28122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| ||||| ||||| || | ||||| || || |||||| | ||||||| | Sbjct 12831 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAG 12890 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | |||||||| |||||||||||||| ||| | |||||||| || | |||| Sbjct 12891 AACTCTTTCTGATTACAACATTCAAAAAGAATCGACGTTGCATTTAGTATTACGATTAAG 12950 Query 25220 AGGAGGA 25226 ||||||| Sbjct 12951 AGGAGGA 12957 >seq15454 Length=877 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || |||||| | ||||| ||||||| || | || Sbjct 35 ATGCAGATTTTCGTGAAAACCCTTACGGGTAAAACTATCACTCTCGAAGTCGAACCTTCG 94 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || || ||||| || || || || Sbjct 95 GATACGATAGAAAATGTCA---AAGCTAAAATTCAA-GATAAGGAAGGTATCCCTCCCGA 150 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | || || ||||| || ||||| ||||||| | | || | ||||| Sbjct 151 CCAGCAACGTTTAATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACGTTATCTGATTA 210 Query 25175 CAATATTCAAAAAG 25188 ||||||||| |||| Sbjct 211 CAATATTCAGAAAG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433010590219130