Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq39349 132 5e-26 seq16807 132 5e-26 seq15896 132 5e-26 seq47637 127 2e-24 seq27620 113 5e-20 >seq39349 Length=17693 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||| ||||| || || || ||||| || | ||| || | || || | ||| | Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | |||||||| |||||||| || || ||||| || || ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | || | || ||||| | ||| | | | ||| |||||| |||| ||||| || Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCT-ATCCATCTTAACGCCCAGTCT 11484 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||||| | || | |||||| | ||||| || || |||||||| |||||| Sbjct 11483 GCTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAAATCTC 11432 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 93330 TAAATAGGTAATCT--CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 ||| || ||||| | || ||| | | |||| || || || || || |||| | || Sbjct 11373 TAAGTATGTAATATACCGTTCGACAGGATCTTTGATATAAGTGTCAATCAACAAACTGTA 11314 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||| || ||||| ||||| || |||| ||||| || ||||| ||| |||| ||||| | Sbjct 11313 CATCTCTGAATGTACATTTTCAATTGTTATTTGAAACCCGTAAAAAAATCTGGCTTCGGG 11254 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||| ||||| ||||| |||| | || || | ||||||||||| ||||| || || || Sbjct 11253 GATTTGCACCTCTTGGAAAAAACGTTCGACCAAGTTTTCATTGACAATACCGTCAGAGGC 11194 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 ||||||||| || || | ||| || || | | | || || ||| || || ||||| Sbjct 11193 TGCAAAAAATGCTAAGACATGTGAAATGAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCA 11134 Query 93568 ATC 93570 ||| Sbjct 11133 ATC 11131 >seq16807 Length=2890 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 2463 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 2404 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 2403 TGGGTTCGAACCCCACACCTGACAA 2379 >seq15896 Length=3693 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 3250 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 3191 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 3190 TGGGTTCGAACCCCACACCTGACAA 3166 >seq47637 Length=7922 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 1091 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 1032 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1031 TGGGTTCGAACCCCACACCTGACA 1008 >seq27620 Length=20860 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||| || ||||| ||||| || || | ||||| |||||||| || |||| ||||| Sbjct 17945 TACATCTCGGAATGTACATTTTCTATGGTGATTTGAAATCCGTAAAAGAATCTGGCTTCT 17886 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | || || ||||||||| | || | ||| || | |||||||||||| |||||||| ||| Sbjct 17885 GGAATTTGAACTTCTTGAAAGAAACGCTCGACTAAATTTTCATTGACAATACCATCAGAT 17826 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 || |||||||| || || | || || || | ||| || || ||| || || | | Sbjct 17825 GCCGCAAAAAATGCTAAAACGTGTGAAATGAATTTTTTTTCTTCGGGTTTCAGTTTTTGC 17766 Query 93566 CAATC 93570 ||||| Sbjct 17765 CAATC 17761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556442444402480