Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq48073 131 1e-25 seq37708 122 7e-23 >seq48073 Length=7537 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| |||||| | ||||| |||||||||||| ||||| ||||| Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || ||||||||| |||| ||| || Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| || || ||||| |||||||| |||| || |||||| || Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || || || ||||| |||||||| || ||||| Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCGTCTCCGAGGTGG 6511 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| |||| || ||||||||||| |||| ||||| Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||| | ||| | || ||| |||||| ||||||||||| | || ||| || Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 6631 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||| | || | || || |||||||||||||| |||| || ||||||||| Sbjct 6632 GCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 6691 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTG 111396 || || ||||||||||| |||||||| ||| Sbjct 6692 CATTCAGAAAGAATCTACGCTACATTTGGTG 6722 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| |||||| | ||||| |||||||| ||| ||||| |||||| | Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| || || || |||||||| | || ||| || Sbjct 6117 GACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAG 6176 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | || | || || ||||| |||||||| ||| | |||||||||| Sbjct 6177 CAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAAT 6236 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| || ||||| || || ||||| |||||||| Sbjct 6237 ATTCAAAAAGAATCTACCCTCCATTTGGTTTTACGTCTCCGCGGTGG 6283 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| ||| | ||||| ||||||||||| ||||| || || | Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| || ||| ||||| |||||| | || ||| ||| Sbjct 5661 GATACCATCGAGAACGTTAAAGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCAA 5720 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || || ||||||||||| |||| || ||||||||| Sbjct 5721 CAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 5780 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTG 111396 || || ||||||||||| || ||||| ||| Sbjct 5781 ATTCAGAAAGAATCTACGCTTCATTTGGTG 5810 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 ||| || ||||| |||||||| ||||| | || || || ||||| ||| | ||| || Sbjct 5366 TTTCAAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGA 5425 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 ||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 5426 ACCGTCCGACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACC 5485 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||| || || || | |||| || || ||||| |||||||| ||| || ||| Sbjct 5486 CGACCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGA 5545 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 5546 CTACAATATTCAAAAAGAATCCACCCTTCATTTGGTCTTGCGTCTCCGTGGTGG 5599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || ||||| ||||||| || || ||||| |||| ||||| Sbjct 5828 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATC 5887 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || ||| |||||| || |||||||| | || ||| || Sbjct 5888 AGATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 5947 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | | |||| || ||||||||||| ||||| || || ||| || || Sbjct 5948 GCAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACAA 6007 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || |||||||| || || |||||||| || ||||| || ||||| Sbjct 6008 TATCCAGAAAGAATCCACTCTTCATTTAGTTTTACGTCTCCGTGGTGG 6055 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || ||||| ||||||| || || ||||| |||| ||||| Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111304 |||| || | | | || || |||||| || |||||||| ||||| | || | Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-AATCCCGCCTGACC 6858 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 | || | | || | ||| || ||||| |||||||| | ||| || |||||| | Sbjct 6859 AGCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACA 6918 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || |||||||| || || || ||||| || || ||||| || || || Sbjct 6919 ACATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGG 6967 >seq37708 Length=8338 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| ||||||||||||| |||||| | ||| || || ||| Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || || ||||| |||||||||||| | || ||| ||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| |||||||| | |||||| | || || ||||||||||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| | ||||| || | ||| || | ||||| Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| ||||||||||||| |||||| | ||| || || ||| Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | ||||| |||||| || ||||| || |||| ||| || Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || |||||||||||||| || ||| | ||||||| || Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTG 111396 || |||||||| || || ||||||| ||| Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTG 4204 Score = 98.7 bits (108), Expect = 8e-16 Identities = 170/246 (69%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| ||| |||| || |||||||| ||| | ||| || || ||| Sbjct 3501 ATGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGC 3442 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || ||||| ||||||||||| | || ||||| Sbjct 3441 GATACGATCGAAAACGTTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 3382 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| || || || || | |||||| || ||| | | ||||||||| Sbjct 3381 CAACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAAT 3322 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAAACG 111426 || ||||| || ||||| | || || || ||||| || || ||||| ||| |||| || Sbjct 3321 ATTCAAAAGGAGTCTACGTTGCACTTGGTATTGCGACTTCGTGGTGGTAATTAATAGTCG 3262 Query 111427 TGCGGT 111432 | |||| Sbjct 3261 T-CGGT 3257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || ||||| |||||| |||| || |||||||| ||| | ||| || || Sbjct 5101 AAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCC 5042 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||||| || | | | || ||| ||||| || ||||||||| | || ||| Sbjct 5041 GAGCGACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGA 4982 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| ||| | || || | || || |||||| | ||||| || ||| | | || || Sbjct 4981 TCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTA 4922 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || ||||||||||| || || || || || | || ||| | || || Sbjct 4921 TAACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGG 4871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || ||| | ||||| ||||| || || | ||| || || ||| Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| ||||| ||||||||||| | || ||||||| Sbjct 3897 GATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAA 3838 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | || || |||||| | |||||| | |||| | | || || || Sbjct 3837 CAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAAC 3778 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || || |||||||| | || || | ||||| Sbjct 3777 ATCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGG 3731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| |||| || |||||||| || | ||| || || ||| Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || || |||||| || ||||| || ||||| ||| || Sbjct 4125 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAG 4066 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || |||||| | ||||| || ||| | | || |||||| Sbjct 4065 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAAT 4006 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111401 || ||||||||||| || | ||||| || ||||| Sbjct 4005 ATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCG 3971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422730126108400