Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq48073 188 1e-42 seq37708 187 5e-42 seq28516 95.1 2e-14 >seq48073 Length=7537 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || ||||| || ||||| || |||||||||||| | || | || ||||| Sbjct 5809 ACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCC 5750 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || |||||||||||||| || | |||||||||||||||||| |||||||||||||| ||| Sbjct 5749 AATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTGTCCTGA 5690 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || || ||| ||||||||| || | | ||||||||||| || |||||||| Sbjct 5689 ATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATGGTTTTA 5630 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||||||||| || ||||| Sbjct 5629 CCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || || ||||| || || || || |||||||| || ||||||||| | Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| ||||| || |||||||| || | ||| || ||||||||||| Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||| ||||| || |||||| ||||||||||| | | ||| ||| Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||||||| ||||| || || || || || ||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || ||||| || ||||| || || ||||||||||| ||||| |||||| Sbjct 6513 TTCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGC 6454 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || | || ||||| ||||| || |||||||| || | | || |||||||||| Sbjct 6453 TCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTG 6394 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||| || || ||||| || || |||||| || || || || | | ||||| Sbjct 6393 GAATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTA 6334 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| ||| |||||||| || || | || || || || || ||||| Sbjct 6333 CTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || ||||| |||||||| || || || ||| Sbjct 5599 CCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTC 5540 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| ||||| || |||||||| || | | || ||||||||||| Sbjct 5539 AAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGG 5480 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| || || ||||| || |||||||| | | ||| ||| Sbjct 5479 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACT 5420 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| || || || || || || |||||||| Sbjct 5419 TCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 140 bits (154), Expect = 6e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||||||| || ||||| || |||||||||||| | || | || ||||| Sbjct 6721 ACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCC 6662 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || |||||||| || | |||||| ||||||||||| || ||||| ||||||||| Sbjct 6661 AATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGA 6602 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || || || ||||| || | | ||| || ||||| || |||||||| Sbjct 6601 ATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTTTA 6542 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | || || || || || |||||| Sbjct 6541 CCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || || || || || || ||||| ||||| ||||| || || ||| Sbjct 6055 CCACCACGGAGACGTAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTC 5996 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || |||||||| || || || ||||| || | || ||| ||||||||||| Sbjct 5995 AAGGTACGTCCGTCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGG 5936 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| || || || ||| |||||||| |||| || |||||| Sbjct 5935 ATACCTTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACC 5876 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || ||||| || | || || ||||| || |||||| Sbjct 5875 TCCAGCGTAATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||| Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| ||||| || || || || || | || || ||||| || || Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || ||||| || ||||| ||| ||||| || || | | |||||| Sbjct 6847 ATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACC 6788 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || ||||| || | || || ||||| || |||||| Sbjct 6787 TCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 >seq37708 Length=8338 Score = 187 bits (206), Expect = 5e-42 Identities = 184/235 (78%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| || || ||||| |||||||||||||| | ||| ||||| ||||| || ||||| Sbjct 3268 TTAATTACCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATA 3327 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || || || |||||||| | |||||| |||||||| || || | ||| || || Sbjct 3328 ATCCGAAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATC 3387 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 || || || ||||| |||||||| || || ||||| ||| ||||| || || ||| | Sbjct 3388 CGGAGGGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATC-GCTAG 3446 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| | |||||||||||| || || | ||||||||||| |||||||| Sbjct 3447 GCTCGACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || |||||||||||||| ||||| || || || || |||||||| Sbjct 4433 ACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCTTCG 4492 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || |||||||| ||||| | ||| || ||||| |||||||||||||| |||||| Sbjct 4493 AGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCTTGA 4552 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || |||||||| || || ||||| | || |||||||| ||||| || || Sbjct 4553 ATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTCTTA 4612 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||||||||||||||||||| Sbjct 4613 CCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 165 bits (182), Expect = 1e-35 Identities = 164/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||| || ||||||||||||||||| ||||||||||| || || || ||||| Sbjct 4205 ACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCC 4264 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || |||||||| ||||| | ||| |||||||| ||||| || || || |||||| Sbjct 4265 AATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGA 4324 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || ||||||||||| ||| | || ||||| | ||| || ||||| Sbjct 4325 ATTTTAGCCTTTACATTTTCGATGGTGTC-GCTAGGCTCAACTTCGAGGGTAATCGTTTT 4383 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||| || ||||| || ||||| Sbjct 4384 GCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || ||||| |||||||||||||| || || | |||||||| Sbjct 3521 ACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTCG 3580 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| || || | ||| |||||||| ||||| || || || |||||| Sbjct 3581 AGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGA 3640 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||||||| ||||||||||| | |||||||| || |||||||| || Sbjct 3641 ATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTTG 3700 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||| || ||||| || ||||| Sbjct 3701 CCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| ||||| || | ||| || |||||||| || ||||| || ||||| ||||| || Sbjct 3971 CGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCG 4030 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | || || |||||||| || | | ||| |||||||| ||||| || || || Sbjct 4031 TCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTA 4090 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || |||||||| ||||| ||||| || || ||||| | |||||| Sbjct 4091 TCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGATG 4150 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || | ||| || ||||| || ||||| Sbjct 4151 GTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 152 bits (168), Expect = 9e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| || | ||| || ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 4660 TACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTC 4719 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || ||||| || || | | |||||||||||| || |||||||| |||||||| Sbjct 4720 GAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTG 4779 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTT 68430 || || ||||| || ||||| ||||| ||| | || ||||| | ||| || |||| Sbjct 4780 GATTTTAGCCTTCACATTTTCGATAGTGTC-GCTAGGCTCGACTTCGAGGGTAATCGTTT 4838 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | ||| || ||||| || ||||| Sbjct 4839 TGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 152 bits (168), Expect = 9e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||||||||||||||| || || || || || || ||||| Sbjct 4889 ACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCG 4948 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| ||||| | ||| || ||||| || |||||||| || ||||| Sbjct 4949 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGG 5008 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| ||||| ||||| ||| | |||||||| | |||||||||||| Sbjct 5009 ATTTTCGCTTTGACGTTTTCGATAGTGTC-GCTCGGCTCTACTTCGAGGGTGATGGTTTT 5067 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | || || || || ||||||||| Sbjct 5068 ACCAGTCAACGTTTTAACAAAGATCTGCATT 5098 >seq28516 Length=38763 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||||||||| || | || || ||||||||||||||||| ||||| || || | ||||| Sbjct 20535 CAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCGGAAAGGGTACGTCCATC 20476 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 ||| | |||||| || ||||| || | | ||| ||||| || ||||||||| Sbjct 20475 TTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCT 20424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920930008131440