Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq37708 176 1e-38 seq48073 163 7e-35 >seq37708 Length=8338 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | || ||| || | ||| | ||| |||||| ||||| || ||||| | | Sbjct 3731 CCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAG 3790 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | |||||| || |||||||| ||||| |||||| |||| Sbjct 3791 AGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 3850 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || |||||||| |||||||||||||| || | |||||| | || ||| Sbjct 3851 ATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACT 3910 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 3911 TCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 172 bits (190), Expect = 1e-37 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| |||||||| | || || | |||||||| | ||||||||| ||||| Sbjct 4906 TTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAA 4965 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || ||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct 4966 GATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTT 5025 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||||||| ||||||||||| ||||| || || || |||| || || || Sbjct 5026 TTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAAC 5085 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 5086 AAAGATCTGCATT 5098 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | ||| | || | ||| || ||||| |||||||| || | Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| | || ||||| | || ||||| ||||| || ||||| || ||| ||| Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||||||||| || |||||||| || | |||||| | || ||| Sbjct 3395 ATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACT 3454 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || |||| ||||||||||| |||||||| Sbjct 3455 TCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| | ||| | ||| |||||||||||||||||| |||| | || | ||| ||| Sbjct 4658 AGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCT 4717 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || || ||||||| ||| ||||| ||||| |||||||| || Sbjct 4718 TCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCT 4777 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || ||||| ||||| |||| ||||| | || |||||||| || ||||| Sbjct 4778 TGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTT 4837 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| || || ||||| || ||||| Sbjct 4838 TTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || |||| |||||| | |||||||| |||||||| || ||||| Sbjct 4223 TCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAA 4282 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || || ||||| |||||||| || ||||| || || || ||| Sbjct 4283 ATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTT 4342 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || |||||||| || ||||| || ||||||| || || ||| Sbjct 4343 TCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACG 4402 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 4403 AAGATTTGCAT 4413 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||||||||| | ||| || | |||||||| | |||||| || ||||| Sbjct 3994 TTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAA 4053 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | ||| || || || ||| ||||| |||||||| || ||||| || || || Sbjct 4054 AATTAAACGTTGCTG---GTCGGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTGAC 4110 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||||| | || |||||||| ||||| || || || |||| || || Sbjct 4111 ATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTT 4170 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 4171 TACGAAAATTTGCAT 4185 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | || || | || ||||| | ||||| || ||||| Sbjct 4450 TTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAA 4509 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || ||| || || ||||| ||||| || |||||||| || || || Sbjct 4510 GATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCTTGAATTTTCGCCTTGACATT 4569 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || || | || ||||| | ||||| ||||| || |||| |||||||| Sbjct 4570 TTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGAC 4629 Query 288462 GAATATCTGCAT 288473 |||||||||||| Sbjct 4630 GAATATCTGCAT 4641 >seq48073 Length=7537 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | ||||| ||| |||||| |||||||| |||||| Sbjct 6055 CCACCACGGAGACGTAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTC 5996 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||||||||||||||||||| || ||||| || | || || || |||| Sbjct 5995 AAGGTACGTCCGTCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGG 5936 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || |||||||||||||||||||| || | ||| | |||||| Sbjct 5935 ATACCTTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACC 5876 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||| ||||||| ||| || ||||| || |||||| Sbjct 5875 TCCAGCGTAATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || ||| || || || |||||||| || ||||| || || ||| Sbjct 6931 TCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAG 6872 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | |||||||||||||||||||| ||||| || ||||||||| Sbjct 6871 ATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTT 6812 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| |||| || |||||| || ||||| |||||||| ||||||| ||| || ||| Sbjct 6811 TCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACG 6752 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 6751 AAAATTTGCATT 6740 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | ||||| ||| ||||||||| ||||| |||||| Sbjct 5599 CCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTC 5540 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||||||||| || |||||||| ||||| || | ||||| || |||| Sbjct 5539 AAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGG 5480 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||| ||||| || ||||| || | ||| || ||| ||| Sbjct 5479 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACT 5420 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || ||||| || || || |||||||| Sbjct 5419 TCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | | || | ||| | || ||||||||| |||||||| ||| | Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| || ||||| || |||||||||| | ||| || |||| Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || || || ||||| |||||||| || | ||| || ||| ||| Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || ||||| || || || || || || ||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | || || || | ||||| ||| |||||| || || ||||| ||| Sbjct 5828 TCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCT 5769 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || |||||||| ||||| || || |||||||||| | ||||| ||| Sbjct 5768 CAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 5709 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || ||||| || || ||||| ||||| || || | |||| || ||||| Sbjct 5708 GATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTAC 5649 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||| || || || ||||| | ||||||||||| || ||||| Sbjct 5648 TTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | || || || | ||| | ||| |||||| || || ||||| ||| Sbjct 6740 TCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCT 6681 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || |||||||| ||||||||||| |||||||||| | || || ||| Sbjct 6680 CAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGG 6621 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| || || ||||| |||||||| ||||| || | |||| || ||| || Sbjct 6620 GATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAAC 6561 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||| || || || || |||| ||| || || || || |||||| Sbjct 6560 CTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || ||| | || || |||||||| || |||||||| ||||| Sbjct 6475 TCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAA 6416 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||||| || ||| || |||||||||||||| ||||| ||||| |||||| Sbjct 6415 ATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTTT 6356 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || ||||||||| || || || || || ||||| | || || || Sbjct 6355 TCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACA 6296 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 6295 AAAATTTGCAT 6285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178745999019156