Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq37708 118 1e-21 seq48073 102 9e-17 seq55436 98.7 1e-15 seq32236 95.1 1e-14 seq15280 95.1 1e-14 seq26840 87.8 2e-12 >seq37708 Length=8338 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || ||||| ||||||||||| || || ||||||||||| || || | Sbjct 3958 ACCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGA 4017 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| |||| || || || ||||| ||||| || | || |||||||||| || Sbjct 4018 GAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGG 4077 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || | | ||| |||| | |||| | | | ||||||||| | || | Sbjct 4078 AATTCCCTCTTTAT-CTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGA 4136 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||||||||||| || || | || ||||| || |||||||| Sbjct 4137 CTTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| ||||| || ||||||||||||||| ||||| | || || | | Sbjct 3287 CGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCA 3346 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || || ||||| || | || | | || ||| Sbjct 3347 TCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTG 3406 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || |||||| || | | | | ||| ||||| | || || |||| |||||| Sbjct 3407 TCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATG 3466 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | |||||| || ||||| ||||| Sbjct 3467 GTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| || | |||||||||| ||| ||||||||||| || ||||| | Sbjct 3502 ACCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGA 3561 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || || || || ||||| || || || |||||||||| || Sbjct 3562 AAGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGG 3621 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || | | ||| |||| | |||| | | | ||||| || | || | Sbjct 3622 AATTCCCTCTTTAT-CTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTA 3680 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||| ||||| || | || || || ||||||||||| Sbjct 3681 CTTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || || | ||||||||| || || ||| ||||| || |||||||| | Sbjct 4186 ACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGA 4245 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | || ||||| ||||| ||||| || |||||||||| || Sbjct 4246 GAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 4305 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || || ||| |||| | || | | | | |||||||| | || | Sbjct 4306 AATTCCCTCTTTATCT-TGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAA 4364 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || || |||||||| || | || || || ||||||||||| Sbjct 4365 CTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || || || || | || || | |||| || || || || |||||||| Sbjct 4907 TCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAG 4966 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || ||||| |||| || | || || || || |||||| ||||| | Sbjct 4967 ATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTT 5026 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||||| || || |||| ||||||||||| || || | ||| || ||| Sbjct 5027 TCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACA 5086 Query 42198 AAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 5087 AAGATCTGCATTTT 5100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| ||||| | ||||||||||| || || ||||| ||||| ||||| | Sbjct 4642 ACCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGA 4701 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | || || ||||| || || || || || | || || ||||||| || Sbjct 4702 CAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGG 4761 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||||| |||||| || | | | | |||||||| | || || Sbjct 4762 GATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGAC 4821 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || |||||||| || | || ||||| || |||||||| Sbjct 4822 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 >seq48073 Length=7537 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || |||||||| | || || ||||||||||| ||||| ||||| || | Sbjct 6272 ACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCC 6213 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||| ||||| ||||| || | || ||||||||||| ||| | | || || Sbjct 6212 GTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTT 6153 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || || || ||||| | | | |||||| || |||||| || | ||||| Sbjct 6152 ATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGAT 6093 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || ||||| || ||||| |||||||| Sbjct 6092 GGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | |||||| || || || | || ||| |||||||| |||||||| | Sbjct 6511 CCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTC 6452 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || |||| || | ||| || || ||||| || | ||||||||||||| ||| Sbjct 6451 AAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGA 6392 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| ||| |||| | ||||| | | | ||| || || ||| || Sbjct 6391 ATGCCTTCTTTATCC-TGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTAC 6333 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || |||||||| || |||| ||| || ||||| |||||||| Sbjct 6332 TTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||| | ||| || |||||||||||||| || || ||| || | Sbjct 5588 ACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCC 5529 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||| || || ||||| || | ||||||||||||| ||| | | || ||| Sbjct 5528 GTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATAC-CTTCTT 5470 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | ||| |||| | ||||| | | | |||||| || ||| || || | |||| Sbjct 5469 TATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGA 5410 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| || || || || || || ||||| || ||||| || Sbjct 5409 TGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| || |||||||| | || ||| |||||||| |||||||| Sbjct 6968 ACCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCT 6909 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || |||| || | ||| |||||||| || || | |||||||||||| | || Sbjct 6908 CAGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGG 6849 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || || ||| ||| |||| | || | | | | || ||| || ||| | Sbjct 6848 GATTCCTTCTTTATCC-TGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTA 6790 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | ||| || || || || || | || || || || ||||||||| Sbjct 6789 CCTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 >seq55436 Length=6824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| | |||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 6024 ATGCAAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6083 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 6084 TACTTACCACTATACTACCGAGGA 6107 >seq32236 Length=13731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 715 AAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 774 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 775 TACCACTATACTACCGAGGA 794 >seq15280 Length=11941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 9083 AAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9142 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 9143 TACCACTATACTACCGAGGA 9162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 9284 AAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9343 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 9344 TACCACTATACTACCGAGGA 9363 >seq26840 Length=14082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 57081 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATTG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542804697803680