Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq37708 154 1e-32 seq48073 123 2e-23 seq39349 95.1 1e-14 >seq37708 Length=8338 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| || || | ||| | || ||||| ||||||||||| ||||| | | ||| || Sbjct 3512 AATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGG 3571 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| || || |||||||| |||| || || |||||||||||||||||||| ||| Sbjct 3572 CCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCT 3631 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||| || || | || |||| || || ||||||| || Sbjct 3632 TTATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTG 3691 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||||||||||||| ||||| ||||| |||||||| Sbjct 3692 ATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| |||||| | ||| | ||||| |||||||| ||||||||||| | Sbjct 4186 ACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGA 4245 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | ||||||| | || || ||||| ||||||| || |||||||||||||| Sbjct 4246 GAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 4305 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| ||||| ||||| ||||| ||||||| || | || || | | || || Sbjct 4306 AATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAAC 4365 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || ||||||||||| ||||| ||||| |||||||| Sbjct 4366 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | ||||| | || | ||| | |||||||||||||||||| || || || | Sbjct 3958 ACCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGA 4017 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | ||||||| || || || ||||| |||| | || ||||||||||| || Sbjct 4018 GAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGG 4077 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| ||||| ||||| ||||| ||| ||| || | || || | | || || Sbjct 4078 AATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGAC 4137 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| || || ||||| |||||||||||||||||||| Sbjct 4138 TTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || || | ||| | ||| ||||||||||| || || ||||| | Sbjct 4642 ACCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGA 4701 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| ||||| ||||||||| | || | || || ||||||||||| Sbjct 4702 CAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGG 4761 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| ||||| ||| ||| || | || || | | || || Sbjct 4762 GATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGAC 4821 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || ||||||||||| |||||||||||||||||||| Sbjct 4822 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | |||| || || | |||| || ||||||||||| ||||||||||| | Sbjct 4414 ACCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGA 4473 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| ||||| || ||||| | ||||| || ||||| ||||| || Sbjct 4474 AAGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGG 4533 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||| ||| ||| || | || |||| | || || Sbjct 4534 AATGCCTTCCTTATCTTGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGAC 4593 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || ||||| || || ||||| || ||||| Sbjct 4594 TTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| |||| ||| | || |||||||| || |||||||| || | Sbjct 3730 ACCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGA 3789 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || || || ||||| | ||||| || || || ||||| || Sbjct 3790 GAGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGG 3849 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | |||| ||||| || || | ||||| | | || | Sbjct 3850 GATTCCTTCTTTGTCTTGGA-TTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGA 3908 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | || || ||||| || || ||||||||||| ||||| Sbjct 3909 CTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 109 bits (120), Expect = 5e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || || || || | |||| || ||||||||||| ||||| || || | Sbjct 4870 ACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGA 4929 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | ||||||| || || || || || | ||||| || ||||| |||||||| Sbjct 4930 AAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGG 4989 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCC 64393 || |||||||| ||||| | |||| ||||| || || | || || | |||| || Sbjct 4990 GATGCCTTCTTTATCTTGGA-TTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGC-TCT 5047 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| | || | ||| || || ||||| ||||| || || || |||||||| Sbjct 5048 ACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 >seq48073 Length=7537 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| |||| || || |||||||||||||||||||| | || || ||||||| Sbjct 6493 ACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCC 6434 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||| || ||||| |||| | ||||||||||||||| ||||| |||||||| || || Sbjct 6433 AACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTG- 6375 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| || || | |||||| | || ||||| | || | ||| || Sbjct 6374 AATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTT 6315 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| || ||||||||||| Sbjct 6314 ACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| ||||| |||||||||||||||||||| | || || ||||||| | ||| Sbjct 6944 ATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCCAACTG 6885 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || || ||| | || | ||||||||||| || || ||||||||||| || || ||||| Sbjct 6884 TTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGAATTTT 6825 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || || | ||||| | || || || | || | ||||| ||||| Sbjct 6824 GGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGT 6765 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 ||||||||| ||||||||||||||| Sbjct 6764 CAAAGTTTTAACGAAAATTTGCATT 6740 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || |||||||||||||| ||||| || | || || ||||||| | ||| Sbjct 5576 ATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCTTCCAACTG 5517 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| |||| | ||||||||||||||| || || |||||||| ||||| | ||| Sbjct 5516 TTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCTTG-AATTT 5458 Query 64360 TTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 | ||||| ||| || | || || | || ||||||| || | |||||| || | Sbjct 5457 TAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTCTTTCCAG 5398 Query 64419 TCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | |||||| || ||||| ||||| || Sbjct 5397 TAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || |||||||| || || ||||| || | ||| || ||||||| Sbjct 6037 ACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCGTCTTCT 5978 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || ||||| || |||| | || ||||||||||| || || |||||||| ||||| Sbjct 5977 AATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTG- 5919 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||| ||||| || || | ||||| | || || || | || | ||||| Sbjct 5918 AATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGTCTT 5859 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||||||||| ||||||||||||||| Sbjct 5858 TCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || || || ||||| | ||| | ||| |||||||| |||||||| ||||| Sbjct 6739 CCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 6680 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | || || ||||| | || | | ||||||||||| || Sbjct 6679 AAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGG 6620 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| | |||| ||||| ||| || | ||||| | || || Sbjct 6619 ATACCTTCTTTGTCTTG-AATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAAC 6561 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || |||||||||||||| |||||||||||| Sbjct 6560 CTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || || || ||||| | ||||| ||| |||||||| |||||||| ||||| Sbjct 5827 CCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 5768 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | ||||| ||||| | || | | || |||||||| || Sbjct 5767 AAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 5708 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCAC-CGGCGTCCA 64394 || ||||| || || || || || |||||| | ||| | ||||| |||| || | Sbjct 5707 ATGCCTTCCTTGTCCTGAATCTTA-GCTTTAACGTTCTCGATGGTATCGGACGGC-TCTA 5650 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||| || ||||| || || || |||||||||||||| Sbjct 5649 CTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| || ||||| || || || ||||||| | ||| || ||| Sbjct 6253 GTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGTTTACCG 6194 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||||||||| || || |||||||| ||||||| | || ||||| Sbjct 6193 GCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTA-TCTTGGCTTT 6135 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || || | |||||||| | || | ||| || ||||| | || Sbjct 6134 GACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTGAGCGT 6075 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || ||||||||||| Sbjct 6074 TTTAACAAAAATTTGCAT 6057 >seq39349 Length=17693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 132856 CTTCGTCTCTTGATATAAGCTCGTTGCTGAACGTGAGGCCGGGCATGATGCCTTTTGTTT 132915 |||||||||| ||||| | ||||| ||||| || || || ||||| | ||| || ||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 132916 TAATAAAAAATATTGCCGCAAAACTGCCCGAAAAGAACACGCCTTCTACAATTGCAAAAG 132975 ||| ||||||| ||||||||||| || |||||||| | ||||| ||| ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 132976 CCACCATTCGTCTTGCCAA 132994 | | |||| ||| |||| Sbjct 11542 CAATGATTC-TCTCTCCAA 11525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499269429352880