Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq48073 170 1e-37 seq37708 136 3e-27 seq8389 87.8 1e-12 seq28516 84.2 2e-11 >seq48073 Length=7537 Score = 170 bits (188), Expect = 1e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || || | || ||||| || ||||| ||||| || ||||| |||||||| Sbjct 6739 CCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 6680 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| ||||||| |||||||| || ||| | ||||| | || |||||| ||| Sbjct 6679 AAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGG 6620 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||||| ||| ||| |||| || |||||| ||| || Sbjct 6619 ATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACC 6560 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| |||| ||||||||||||||||||||| Sbjct 6559 TCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | || ||||| |||||||| || |||||||| |||||||||||||| Sbjct 6511 CCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTC 6452 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| ||||||| || ||||| || ||| | || || ||||| |||||| |||| Sbjct 6451 AAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGA 6392 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| || |||| || ||||| |||||| Sbjct 6391 ATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACT 6332 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||||||| || | ||||| ||||||||||||||| Sbjct 6331 TCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCATA 6284 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 |||||| ||||||||||| || |||||||| |||||||||||||| ||| | | |||| Sbjct 6953 TAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTC 6894 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || ||||| ||||| | ||||| ||||| ||||| || |||||||| || || Sbjct 6893 TTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATC 6834 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||||| || || |||| ||||||||| |||||| || | ||||| || Sbjct 6833 CTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGT 6774 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| |||||| || ||||||||||| Sbjct 6773 CTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | |||||| ||||| |||||||| |||||||| || || ||||||||| Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || ||||| || ||| | ||||| | ||| |||||| ||| Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || || ||| ||| || |||| || || ||| ||| || Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| |||||||| || || || ||||| ||||||||||||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCATA 6056 Score = 141 bits (156), Expect = 7e-29 Identities = 164/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||||||||| || |||||||| || ||||| ||||| | | | | ||||| Sbjct 5584 AAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCT 5525 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || ||||| || ||| | || || ||||| |||||| ||| || ||||| || || Sbjct 5524 TCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCT 5465 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| |||| || || ||| ||| || |||||||| ||||| Sbjct 5464 TGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTC 5405 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || || |||||||| |||||||| ||||| |||||| Sbjct 5404 TTTCCAGTAAGAGTTTTAACAAAAATCTGCAT-CTTGAAA 5366 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || || | || |||||||| ||||| ||||| || ||||| |||||||| Sbjct 5827 CCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 5768 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| ||||||| ||||| || || ||| | ||||| | ||||||||| ||| Sbjct 5767 AAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 5708 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| || | || || |||||| ||||| Sbjct 5707 ATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACT 5648 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||||||||| || | || || || |||||||||||| Sbjct 5647 TCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCATA 5600 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||||||||||||||| || || ||||| || || ||||| ||||| Sbjct 6055 CCACCACGGAGACGTAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTC 5996 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | ||||||||||||||||||||||| | || || || || |||||| ||| Sbjct 5995 AAGGTACGTCCGTCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGG 5936 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| || |||| || ||||| |||||| Sbjct 5935 ATACCTTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACC 5876 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || || |||| |||||| || ||||||||||| Sbjct 5875 TCCAGCGTAATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 5829 >seq37708 Length=8338 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| ||||| ||||| | || || |||||||| || || || || | Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || ||||||| | |||||| || ||| | || ||||| || |||||| ||| Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || ||||||| || ||| |||| || || ||||| || || Sbjct 4079 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACT 4138 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || |||||||| ||||||| |||||||| |||||||||||| Sbjct 4139 TCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCATA 4186 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | || ||||| | || || |||||||| |||||||||||| | Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| |||||||| || ||| | || | ||| || |||||| ||| Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || |||||| |||||| |||| || || |||||| || || Sbjct 4307 ATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACT 4366 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||| ||||| || |||| ||||| || || ||||||||| Sbjct 4367 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCATA 4414 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | || ||||| | ||||| |||||||| || || |||||| | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCG--G 4700 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | || | ||||| | |||||||| || | |||||||| ||||||||| | Sbjct 4701 ACAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAG 4760 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| ||||| ||||| || ||| |||| ||||| |||||| || | Sbjct 4761 GGATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGA 4820 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | |||||| ||||| || |||| |||||||| |||||||||||| Sbjct 4821 CTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCATA 4870 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | ||| || |||||||| || |||||||| ||||| || || Sbjct 4871 CCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAA 4930 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | |||||| |||||| | || | ||| || || ||| || Sbjct 4931 AGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGG 4990 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| ||| || |||| ||||| ||||| ||||| Sbjct 4991 ATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACT 5050 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || | ||| ||||||||||| |||| ||||| ||||| || ||||| ||| Sbjct 5051 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTTT 5101 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| || |||||||| || |||||||| ||||||||||| Sbjct 4415 CCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAA 4474 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||||| || ||| | || | ||| || || ||| ||| Sbjct 4475 AGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGA 4534 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| || ||| |||| || || || ||| || || Sbjct 4535 ATGCCTTCCTTATCTTGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACT 4594 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| |||| || || || || || |||||| Sbjct 4595 TCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCATA 4642 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || || || | ||||| || ||||| || || ||||| Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | || || || ||| | || | ||| || || || || Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| || || |||| || ||||||||| || || Sbjct 3395 ATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACT 3454 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| |||||||||||||||| || || || || || |||||| Sbjct 3455 TCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCATA 3502 >seq8389 Length=28122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | || || |||||||| ||||||||||| Sbjct 12956 CCTCCTCTTAATCGTAATACTAAATGCAACGTCGATTCTTTTTGAATGTTGTAATCAGAA 12897 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | |||||| |||||| | |||||||| ||||| || ||| Sbjct 12896 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGA 12837 Query 15070 ATTCCT 15075 || ||| Sbjct 12836 ATGCCT 12831 >seq28516 Length=38763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 15073 CCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCT 15132 ||||| ||||| ||| || ||| ||| |||| |||||||||||| ||| || || Sbjct 20348 CCTTCTTTGTCTTGAATCTTAGCTTTCACATTTTCGATAGTATCGCTAGGTTCGACCTCA 20289 Query 15133 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||| ||||| ||||| |||| |||||| || ||||||||||| Sbjct 20288 AGGGTGATGGTCTTACCCGTCAAAGTTTTGACGAAAATTTGCAT 20245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357130212817070