Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq37708 152 5e-32 seq48073 129 6e-25 seq15454 98.7 9e-16 seq8389 82.4 7e-11 >seq37708 Length=8338 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | |||||||| | |||||| |||||||| ||||| |||||| | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || |||||||| || || ||||||| || || || |||||||| Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| |||||| ||| | | ||||| ||||| || ||||||| Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACT 4822 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | |||||||||||||| |||||||| ||||| ||||| Sbjct 4823 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| ||||| || | ||||||||| ||||||||||| ||||| Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | | ||| || ||||| ||||| ||| | || | || |||||||| ||||| Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||||| ||| | | ||||| || || || ||||||| Sbjct 3395 ATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACT 3454 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || |||| || || || || |||||||| Sbjct 3455 TCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 ||||| | ||||||||||| || ||||||||||| || ||||||||| | ||| | | Sbjct 4196 AATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTA 4255 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || | ||||| || ||| | || | || ||||| |||||||| || ||||| Sbjct 4256 CCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCT 4315 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || ||||| ||| | | ||||| |||||| || ||| ||||||| ||| Sbjct 4316 TTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTA 4375 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||||||||| ||||| || || || ||||| Sbjct 4376 ATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||||||| |||||||| | ||| || |||||||||||||| || || | || | | Sbjct 3968 AATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTA 4027 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| || ||| | || || || ||||| ||||| || || ||||| Sbjct 4028 CCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCT 4087 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || ||||| ||||| | ||||| ||||| | ||||||||||| || Sbjct 4088 TTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTG 4147 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| || |||| |||||||| ||||| ||||| Sbjct 4148 ATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || |||||||| || || || || | || | | || || Sbjct 4889 ACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCG 4948 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| |||| | || |||||||||||||| ||||| || || || | Sbjct 4949 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGG 5008 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 |||||| |||| | ||||| ||||| | ||| ||||||| ||| | ||||| Sbjct 5009 ATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTA 5068 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||||| ||||| |||||||| Sbjct 5069 CCAGTCAACGTTTTAACAAAGATCTGCAT 5097 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | |||||| | ||||| || | || || |||||||| || |||||||| Sbjct 4415 CCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAA 4474 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| || |||||||| || ||| |||| | || ||||||||||| || Sbjct 4475 AGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGA 4534 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || |||||| ||||| | ||| | ||||| || ||||||| Sbjct 4535 ATGCCTTCCTTATCTTGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACT 4594 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || || || |||||||| Sbjct 4595 TCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || ||||| || || ||||| || Sbjct 3731 CCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAG 3790 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || ||||| || ||| |||| | || || |||||||| || Sbjct 3791 AGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 3850 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||||| || || || ||||||| Sbjct 3851 ATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACT 3910 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||||| ||||| | || ||||| ||||||||||| Sbjct 3911 TCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 >seq48073 Length=7537 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||||||| | || || ||||||||||||||||| |||| | Sbjct 5599 CCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTC 5540 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||||||| ||| | || || |||||||| ||||| || Sbjct 5539 AAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGG 5480 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || ||| ||| |||| || | ||| | |||||| | ||||| Sbjct 5479 ATACCTTCTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGAC 5421 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || |||||||| |||||||||||||| Sbjct 5420 TTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || |||||||| | ||||| |||||||||||||| ||||||| Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | |||||| || ||| ||||||||| |||||| ||||| || Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || || || |||| | ||||| |||||| | || ||| Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| ||||| || ||||| |||||||| ||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||| | | ||||||||||| |||||| ||||| ||||| || ||||||| Sbjct 6740 TCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCT 6681 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | |||||||| ||| ||||||||| ||||| ||||| || Sbjct 6680 CAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGG 6621 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || |||| | ||| ||| || || | | ||| | ||| || | || | Sbjct 6620 GATACCTTCTTTGT-CTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAA 6562 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||| || |||| ||||||||||||||| ||||| Sbjct 6561 CCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| || || || | || |||||||||||||| |||||||||| Sbjct 6512 TCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCT 6453 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | ||||||||| ||| | || || |||||||| ||||| || Sbjct 6452 CAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGG 6393 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || || ||| ||| ||| || |||| | ||| | || || | || | Sbjct 6392 AATGCCTTCTTTATCC-TGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTA 6334 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | ||| | ||||| ||||| | ||||| |||||||| ||||| Sbjct 6333 CTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || |||||||| | || |||||||||||||| |||||||||| || || ||| Sbjct 6955 CGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCG 6896 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| |||||||||||||||| || || || || || || || Sbjct 6895 TCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTA 6836 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||||| ||| | | ||||| || || | || || || | || | | Sbjct 6835 TCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATC 6776 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||||| |||||| || ||||| ||||| Sbjct 6775 GTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 >seq15454 Length=877 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| |||||||||||||| | ||| | | ||| || | || ||||| ||| ||| Sbjct 224 CTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 165 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGT 127042 | || || ||||| |||||||| || || ||||| || ||| ||| |||| || | | Sbjct 164 TTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCT-TGAATTTTAGCTTTGACATTT 106 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | || |||| | |||||||||| || | ||||| || || || ||||| || Sbjct 105 TCTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACG 46 Query 127103 AAAATCTGCAT 127113 ||||||||||| Sbjct 45 AAAATCTGCAT 35 >seq8389 Length=28122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| || | |||||| || || ||||| | ||| || ||||||||||| |||||||| Sbjct 12959 GCTCCTCCTCTTAATCGTAATACTAAATGCAACGTCGATTCTTTTTGAATGTTGTAATCA 12900 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || | ||| || || ||||| |||||| | ||||| || || ||||| ||| Sbjct 12899 GAAAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGA 12840 Query 127004 GGTATGCC 127011 || ||||| Sbjct 12839 GGAATGCC 12832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475143568136480