Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq48073 127 5e-24 seq37708 104 6e-17 seq15454 100 7e-16 >seq48073 Length=7537 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || |||||||| ||||| | |||||| || || ||| | || ||||||| ||| Sbjct 6943 TGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCCAACTGT 6884 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | ||||||||||| || ||||||||| |||||||| || Sbjct 6883 TTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGAATTTTG 6824 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| ||||| || || | | |||||| |||| ||| |||||||| || || Sbjct 6823 GCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGTC 6764 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| || |||||||| Sbjct 6763 AAAGTTTTAACGAAAATTTG 6744 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| | ||| || || ||||| ||||| | |||||| || |||||| Sbjct 6506 TCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGT 6447 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||||| ||| ||||||||||| || | ||||||||||| || ||| || Sbjct 6446 TCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCC 6387 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| |||||||| ||| |||| ||| ||| | || || | | |||||| |||| Sbjct 6386 TTCTTTATCCTGAAT-TTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCA 6328 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || | ||||| ||||||||||| Sbjct 6327 GGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTG 6288 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | || || || || || ||||| | |||||||| |||||| Sbjct 5593 CGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTA 5534 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| ||| ||||||||||| || | ||||||||||| || || ||| Sbjct 5533 CGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCT 5474 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| ||| || || || ||| | |||||| | | ||| || || || Sbjct 5473 TCTTTATCTTGAAT-TTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAA 5415 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || |||||||| |||||||| || Sbjct 5414 GGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTG 5376 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || ||||| | || || || | ||| | || ||||||| ||| Sbjct 6259 TGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGT 6200 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | ||||||||| || || |||||| || || ||||| Sbjct 6199 TTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTTG 6140 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| ||||| |||||| | | ||| || ||||| ||||| || || || ||| Sbjct 6139 GCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTG 6080 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| Sbjct 6079 AGCGTTTTAACAAAAATTTG 6060 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || || | ||| || || |||||| | || ||||||| || Sbjct 6715 TGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGT 6656 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | | |||||||| || || |||||| || ||||| ||| Sbjct 6655 TTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGAAT-TTT 6597 Query 199547 TGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| ||| ||| | ||| || | | ||| || |||||||| || || ||||| || Sbjct 6596 GGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTTTACCAGT 6537 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| ||||||||||| Sbjct 6536 CAAAGTTTTTACAAAAATTTG 6516 >seq37708 Length=8338 Score = 104 bits (114), Expect = 6e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || |||| ||||||||| | | ||| ||||||||||| || || Sbjct 3755 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCGAGTTGT 3814 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||||||||| || || || || ||||||||| || || || ||| Sbjct 3815 TTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGGAT-TTT 3873 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || |||||| ||||| || || | | || || || | ||||| || ||||| || Sbjct 3874 GGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTTTTACCGGT 3933 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || ||||| || Sbjct 3934 TAACGTCTTTACGAAAATCTG 3954 Score = 104 bits (114), Expect = 6e-17 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || || | ||| || || || || ||||||| ||| ||||| | | || || Sbjct 4880 AGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTA 4939 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| || || ||||| |||||||||||||| ||||| || ||| || |||||| Sbjct 4940 CCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCT 4999 Query 199532 CGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 || || || ||| || || ||| ||||| ||||| | | ||||| || | || Sbjct 5000 TTATCTTGGAT-TTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGT 5058 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || ||||| || | ||||| ||||| || || |||||| Sbjct 5059 GATGGTTTTACCAGTCAACGTTTTAACAAAGATCTG---CATTTT 5100 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || || ||||||| |||||| || | | || || |||||| Sbjct 4430 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCT 4489 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||||||||| ||||| || || ||| ||||| || Sbjct 4490 TCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCT 4549 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || ||| | ||||| | | || || ||||| ||||| ||| Sbjct 4550 TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTC 4609 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || || || || || || Sbjct 4610 TTACCAGTCAAGGTCTTGACGAATATCTG 4638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| || || || | ||| |||||||||||||| ||||| || ||| Sbjct 4673 GTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCGAGCTGTTTGCCG 4732 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||| || ||||| ||| || |||||| || || || || |||| Sbjct 4733 GCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCCTTC 4792 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||| | | || || || | || ||||| || || || | ||| Sbjct 4793 ACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTT 4852 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 4853 TTTACGAAAATTTG 4866 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| | || ||||||||||| | || || || | | || Sbjct 3281 CGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTT 3340 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| ||||||||||||||||| || ||||| ||||| |||||| || ||| Sbjct 3341 CTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCT 3400 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || ||| ||| ||||| || || | | || || || | Sbjct 3401 TCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGG 3460 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | || || || || || || Sbjct 3461 GTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTG 3498 >seq15454 Length=877 Score = 100 bits (110), Expect = 7e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 ||||| |||| || || || |||||||||| ||||||||||||||||| | ||| ||| Sbjct 213 TTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATTAAACGTTGC 154 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTC 199569 ||||| ||| || ||||| || ||||| ||| || || || ||| | || || Sbjct 153 TGGTCGGGAGGGATACCTTCCTTATCTTGAAT-TTTAGCTTTGACATTTTCTATCGTATC 95 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||| || || | ||||| || |||||||| || |||||||| ||||| || Sbjct 94 CGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGAAAATCTG 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178013763316834