Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq37708 114 8e-21 seq28516 89.7 3e-13 seq48073 87.8 1e-12 seq15454 82.4 5e-11 >seq37708 Length=8338 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| || |||||||||||||||||| ||| | || || Sbjct 4888 AACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTC 4947 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| || || || || |||||||| || | || | || || || || Sbjct 4948 GAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTG 5007 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || ||| ||||||| | | || | || | | ||| || |||| ||| |||||||| Sbjct 5008 GATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTT 5067 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | || || |||||||||||||| || Sbjct 5068 ACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || || ||||| ||||| |||||||| ||| |||| Sbjct 3289 CAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCATC 3348 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| |||||||| || ||||| |||||||| || | || | || || ||||| Sbjct 3349 TTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTGTC 3408 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || ||| || ||| | | |||| || | | ||| || |||| ||| ||||| Sbjct 3409 TTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATGGT 3468 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || | ||||| || |||||||||||| Sbjct 3469 TTTACCTGTCAACGTCTTGACGAAGATCTGCATA 3502 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| || ||||| || ||||||||| ||| |||| || Sbjct 4432 AACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCTTC 4491 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| ||||| || || || |||||||| || |||| | || ||||| || Sbjct 4492 GAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCTTG 4551 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| ||||| | | |||| |||| | ||| || || | || || || || Sbjct 4552 AATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTCTT 4611 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || || ||||||||| Sbjct 4612 ACCAGTCAAGGTCTTGACGAATATCTGCATA 4642 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| || ||||||||||| || |||||| | || |||| || Sbjct 3520 AACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTC 3579 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||| ||||| || || || ||||||||||| | || | ||||| || || Sbjct 3580 GAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTG 3639 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | || | |||| || ||| || || | || ||||| || Sbjct 3640 AATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTT 3699 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || ||||| ||||| |||||| Sbjct 3700 GCCGGTCAAGGTTTTCACGAAGATTTGCATA 3730 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | ||||||||| || | || |||||| ||||| ||||||||||| Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || || || ||||| ||||| || |||| ||||||||||| | || Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| || || ||| || ||||| | | |||| || | | ||| || Sbjct 4079 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACT 4138 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||||||||| || | || || || || || |||||| Sbjct 4139 TCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCATA 4186 >seq28516 Length=38763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| ||||| ||||| ||||| || | || |||||| || ||||||||||| || Sbjct 20550 TCCTCCTCTCAATCTCAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCGGA 20491 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 |||| | ||| |||| || ||||| || || || || || | ||||||||||| Sbjct 20490 AAGGGTACGTCCATCTTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTC 20437 >seq48073 Length=7537 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| ||||| |||| ||| |||||| ||||| || ||||| | || | | ||| | | Sbjct 5585 CAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAG-TACGTCCGT 5527 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| |||||||||||| || |||| || |||||||| | || | || || || | Sbjct 5526 CTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTAT 5467 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||| || |||||| | | || | || | || || || | ||| |||| Sbjct 5466 CTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGG 5407 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || ||||| || ||||| |||||||| || Sbjct 5406 TCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 >seq15454 Length=877 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||||||||| || || || || | ||| |||| |||| || |||||||| || | Sbjct 224 CTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 165 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 ||| ||||||||||| | || | || ||||| || ||| || |||||| | Sbjct 164 TTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTT 105 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||||| || | || || |||| || || ||||| ||||| || || ||||| | Sbjct 104 CTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGA 45 Query 34972 AGATCTGCAT 34981 | |||||||| Sbjct 44 AAATCTGCAT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324395808119856