Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq27620 183 3e-41 seq39349 140 4e-28 seq4462 132 5e-26 seq3858 113 5e-20 >seq27620 Length=20860 Score = 183 bits (202), Expect = 3e-41 Identities = 332/497 (67%), Gaps = 63/497 (13%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||| ||||| ||||||| || || | |||||||| || ||||| ||||| Sbjct 18278 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTA 18219 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | |||||| ||| |||||||| |||||||| || || ||||| ||| Sbjct 18218 AGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCA 18159 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 | | | ||| || || |||| | || | |||||||||| ||||| || || Sbjct 18158 ATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCT 18099 Query 19165 TTCTTTTTTACACA--------------TGGCATTG---------TCTCTATAG------ 19195 ||||| |||||||| |||||||| ||||| || Sbjct 18098 TTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAGAAAATCTCTGAAGTAAACA 18039 Query 19196 ---AATTAAA--------------------TAGATA-CATACGCT----------CATCT 19221 ||||||| |||| | |||||| | || || Sbjct 18038 GCGAATTAAAACACTATCCAAAGTACAACATAGAAAACATACGTTTCGTACCGTTCAGCT 17979 Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 | ||| ||||| || | ||||||||||| |||||||| || ||||| | ||||||||| Sbjct 17978 GGATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATG 17919 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTT 19341 | || |||||||||||||| |||| ||||||| || || ||||| | | || | Sbjct 17918 GTGATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGC 17859 Query 19342 TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTA 19401 ||||| ||||||||||| || || |||||| || |||||||||||||| || ||| | Sbjct 17858 TCGACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAA 17799 Query 19402 ATAAAATGTTTTTCATC 19418 || || | |||||| || Sbjct 17798 ATGAATTTTTTTTCTTC 17782 Score = 100 bits (110), Expect = 3e-16 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 |||||| |||||||||| |||||| || ||||| | || | ||||||||| || | | Sbjct 18545 TCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCATTGA 18486 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGA 18911 || |||| ||||| || | ||||||||||||||| || || || || ||||| Sbjct 18485 TACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT--- 18429 Query 18912 TACAACTCTATCTTCATTAGGAGGGTATAGA---AGATGTTTAAACATCAAACATGCAAA 18968 | | | |||||| | || | | || | |||||||||||||||||||||||| Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 18969 ATCACAATGTAGTCCCT 18985 ||| ||||| |||| Sbjct 18368 ATCGGTATGTAAACCCT 18352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||||||||| |||| | |||||| |||||||||| || |||||||| ||||| || | Sbjct 18750 CATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATT 18691 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 || || ||| ||||||||||||||||||||||| Sbjct 18690 CAAAGAAATATTTTCCATAAAATCAAATGGATTTT 18656 >seq39349 Length=17693 Score = 140 bits (154), Expect = 4e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | ||| | || ||||| ||||||||||| |||||||| | |||||| || | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||| ||||||||| |||| ||||| | || || || || |||| | ||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 |||||| |||||||| || || || ||| ||||||||||||||||| |||||| ||| Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 19404 AAAATGTTTTTCATC 19418 || | | |||| || Sbjct 11166 GAATTTTCTTTCTTC 11152 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 ||||||||| ||| ||||| ||| || || | ||||||||| || || |||||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||||| ||||| |||||||||||| || ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 | | ||| |||||| || | || | | || |||||| | | ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||| ||||| ||||| || || || | |||||||||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837 || || | || || |||||| || ||||| | |||||| || ||||| | || | ||| Sbjct 11939 AACTCCACTAATAATCTATCAGCCACAAACTCAATATACGTCTTCATTAATTCGCTGTTC 11880 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897 ||||| || | ||||| || ||||| || | |||||||||||| ||| | || || Sbjct 11879 ATTCCAATCATCGATACAGGCAGGGCATCGGTCAAAAATTCTTGTTCAATAATAACGGCA 11820 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGA---AGATGTTTAAAC 18954 || ||||| | | | | |||||| | ||| | | || | |||||| ||| Sbjct 11819 TCACGAATAAT---TTCGATGATTTCTTCAACACTAGGCTTTTGAACCAAATGTTTGAAC 11763 Query 18955 ATCAAACATGCAAAATC 18971 |||||||| |||||||| Sbjct 11762 ATCAAACAAGCAAAATC 11746 >seq4462 Length=45351 Score = 132 bits (146), Expect = 5e-26 Identities = 211/300 (70%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 || || |||||||| || |||||||| || ||| | || | ||||| || | || Sbjct 16595 AATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTC 16654 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| ||| || ||||| || || ||||||||||||| | |||||| || Sbjct 16655 ATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTA 16714 Query 48273 CCACTATTCCTTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| || || ||| || |||||| || | ||||| | |||||| ||||| || || Sbjct 16715 CCAGAGTTTTTTCGAAGCTCTAAGAAA-TCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 | ||| | | || |||| ||| || ||||||||||| | ||||||||| || || || Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| || | | ||| || || | ||||||||||| ||| || || || | ||| || || Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||||||| | || || || || || |||| |||||||||| | | | ||| ||||| Sbjct 15770 TCCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTC 15829 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 ||||||||| ||||| |||| ||||| || |||||||| || | ||| ||||| Sbjct 15830 ACAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAG 15883 >seq3858 Length=10210 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||||||||| | |||||| || | || | || | ||||||||| || Sbjct 6531 TTATTTCCTCCTTGATCAACATATCTCGCTACGCTATTGAATACACGTAACATTGGCACG 6472 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 |||||||| |||| |||||||| || | ||||| || ||||||| |||||| Sbjct 6471 ATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTGGTAGCTCTAATATTATGT 6412 Query 48474 AT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || || || |||| || || || |||||| |||||||||||| | ||||||||| Sbjct 6411 ATGTGTAAG-CCTACGCCTCCGGCGGATTTAGAAATTAGAGCACACGTTGTAAGGGTATT 6353 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 |||| ||||| ||||| || ||| ||| | |||||||| ||| Sbjct 6352 GAAAATACCTTCGATACTGTCTTCTTCCATCGCAATGAGAAAACAGCTA 6304 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||||||||||| |||| | | |||| || || ||||| ||||| | ||| Sbjct 7919 TGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAGGAT 7860 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || |||||||| |||||||||||||| || ||||||||||| | |||| | ||| | Sbjct 7859 TCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAACGAA 7800 Query 47448 TTTCTTACTCCATATTTTTGTAT 47470 || ||||| || |||| || ||| Sbjct 7799 TTCCTTACACCGTATTGTTTTAT 7777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561686501711280