Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq39349 120 4e-22 seq27620 120 4e-22 >seq39349 Length=17693 Score = 120 bits (132), Expect = 4e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||| |||||| ||| ||||| ||| || || | || ||||||| || ||||||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 ||| ||||||||| || |||||| ||||||||||||||| ||||| || || ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | | | | || ||||| | | | ||| | |||||| || | ||| |||| Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 37378 CCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | ||| ||| ||||| || ||||||||||| || || ||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAA 11437 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | |||||||| ||||| | ||||| ||||| || || || | ||||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 ||| ||||| || |||||| | || ||||| | | ||| || || | ||||| | | Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | ||||||||||| || || || ||| |||||||| || || | |||| | || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATC 37654 || | |||||| || | | ||||| |||||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATC 11131 >seq27620 Length=20860 Score = 120 bits (132), Expect = 4e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||| ||||| ||||| ||||||| || || | ||| ||||||| ||||| |||| Sbjct 18280 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTT 18221 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 ||| ||| ||||| || ||||| ||| ||||||||||||||||| || || ||||| | Sbjct 18220 TAAGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACG 18161 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | | | ||| | | ||||| | || | ||||| |||||||| | ||| || | Sbjct 18160 CAATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCG 18101 Query 37378 CCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | || || ||||| ||||||||||| || || || ||||| Sbjct 18100 CTTTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAGAAA 18055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591871807196080