Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq48073 123 2e-23 seq37708 95.1 9e-15 >seq48073 Length=7537 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || |||||||||||| |||||||| ||| | ||| Sbjct 6958 AGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGA 6899 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| ||||| ||||| |||| |||||| || || | || | || || Sbjct 6898 CCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCT 6839 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || || | | || || |||| || ||||||| |||| Sbjct 6838 TTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTA 6779 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 6778 ATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||||||||| ||||| ||||| || ||||| | | |||| |||| || Sbjct 6722 CACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTC 6663 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||| || || ||||| || |||| || || || || | || | || || ||||| Sbjct 6662 CAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTG 6603 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || ||| ||| | | | || |||| || ||||||| |||||| ||||| Sbjct 6602 AATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTTT 6543 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||||||||| ||||| Sbjct 6542 ACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || |||||||||||||| ||||| ||| | || Sbjct 6274 AGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGG 6215 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| |||||||| || |||| || ||| || || | || | || || Sbjct 6214 CCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCT 6155 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| || | | | || |||| ||||| |||| || Sbjct 6154 TTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTG 6095 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| |||||||| ||||| Sbjct 6094 ATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || || || || || |||||||||||| |||||||| | | |||| Sbjct 6502 AGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGG 6443 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| || ||||| || || | ||||| || || | |||| ||| || Sbjct 6442 CCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCT 6383 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| || | | | || |||| || || |||| ||| Sbjct 6382 TTATCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTA 6323 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||| |||||||| ||||| Sbjct 6322 ATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || ||| ||||||||||||||||| || | | | || Sbjct 5590 AGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGT 5531 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| || ||||| || || | ||||| || || | || | || || Sbjct 5530 CCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCT 5471 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| ||| | | | || |||| || || || | || Sbjct 5470 TTATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTG 5411 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || ||||| || | |||||| ||||||||||||||| || Sbjct 5410 ATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTTG 5369 >seq37708 Length=8338 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | ||||||||||| || ||||||||| || |||||||| || Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| ||||| || |||||||| || || || || || || || | ||| Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||| || |||||| | | | || | ||| || Sbjct 4307 ATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACT 4366 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||||||||| || ||||| ||||| || || || ||||| Sbjct 4367 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380658565826946