Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3858 98.7 5e-16 seq4462 91.5 7e-14 >seq3858 Length=10210 Score = 98.7 bits (108), Expect = 5e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||||||||||| ||||||| ||| | | | ||||||||| | ||||| || |||| Sbjct 7917 AAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAGGATTC 7858 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||||||||||| ||||||| |||||| ||||| ||||| || | | || |||||| Sbjct 7857 GTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAACGAATT 7798 Query 25135 TCTCAAACCATATT 25148 || | ||| |||| Sbjct 7797 CCTTACACCGTATT 7784 >seq4462 Length=45351 Score = 91.5 bits (100), Expect = 7e-14 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| ||| || ||||| | || || |||||||| || || | ||||||||| Sbjct 16654 CATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTT 16713 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || ||| || |||||||||||||||||||| || ||||| ||||| || || Sbjct 16714 ACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | || ||| || |||||| || |||||||| || ||||| || || | ||| Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 | || | ||| || || | ||| |||| | |||||||| Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGT 16878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252854649939650