Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq47332 109 6e-19 >seq47332 Length=57819 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 139860 ATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCT 139919 ||||| || ||||| || ||| |||| || |||||||||||||| |||| |||||| Sbjct 7507 ATTGCTTCAGCTGCGGCTGTTCCTTCGTCCAATAGAGATGCGTTGGCTACGTCTAATCCG 7566 Query 139920 GTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATC 139979 || |||||| |||| | |||||| | ||||||||| ||||| | || |||||||| Sbjct 7567 GTCAGTTCTATGATCATGGTTTGGAAGTTGAATAAATTTTCCAGACGACCTTGAGATATT 7626 Query 139980 TCAGCTTGATAGGGAGTGTA 139999 ||| ||||| |||||||| Sbjct 7627 TCACACTGATATGGAGTGTA 7646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | | ||| || || |||||||| |||||||| ||||||||||| || |||||||| Sbjct 5021 ACAGCTACAGGTCCGACTCCAGGACCACCACCTCCGTGTGGAATACAAAAAGTCTTATGA 5080 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||||| |||| | ||||| | ||||||||| ||| || ||||| || || Sbjct 5081 AGATTTAAATGAGAAACATCAGACCCATAGTCAGCAGGTCGACAAAGTCCTACTTGAGCG 5140 Query 138303 TTTAGATTTGCACCATCGAGATATACCTG 138331 || | ||||| || || | ||||||||| Sbjct 5141 TTCATGTTTGCCCCGTCTAAATATACCTG 5169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578563412977040