Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq37708 158 2e-33 seq15454 145 1e-29 seq48073 141 2e-28 seq8389 86.0 1e-11 >seq37708 Length=8338 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || ||||||| |||||| |||| ||||| |||||||| ||| Sbjct 4640 ATACCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCG 4699 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || || ||| || | ||||| |||||||| || || | ||||| || ||| Sbjct 4700 GACAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGA 4759 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | |||| ||||| ||| || ||| Sbjct 4760 GGGATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCG 4819 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || | |||||||| || |||||||| Sbjct 4820 ACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || ||||||||||| |||| ||| || || | |||||| || || Sbjct 4177 AATTTGCATACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTT 4236 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||||| || || |||||||| ||||| ||||| | | || || Sbjct 4237 GTAATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTG 4296 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| ||||| ||||||||||| ||||| | |||| |||| || || ||| Sbjct 4297 GTCGGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCT 4356 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||| || || || ||||| || || | ||||| || || |||||||| Sbjct 4357 AGGCTCAACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||||||| || | ||||| || | ||||| || || Sbjct 3722 ATTTGCATACCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTG 3781 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | |||||| ||||| || || | | |||||| Sbjct 3782 TAGTCCGAGAGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGA 3841 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| ||||||| ||| | ||| || |||||| | Sbjct 3842 TCGGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCGATCGTATCGCTA 3901 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| || || || |||||||| |||| ||| ||||| || || ||||| Sbjct 3902 GGCTCGACTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||||||| | |||| |||||| || | ||||| |||||||||||| Sbjct 3956 ATACCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCC 4015 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || ||| || || | |||||| ||||| |||||||| | || || || || Sbjct 4016 GAGAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGG 4075 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| ||||||| || | |||| || || ||| | ||| Sbjct 4076 GGAATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCG 4135 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| ||||| | |||||||| || |||||||| Sbjct 4136 ACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | ||| | ||||| ||||| |||| ||| || ||||||||| || | Sbjct 3273 TACCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCG 3332 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | ||||||| ||| || | || |||||||| ||||||| | || ||||| |||| Sbjct 3333 AAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAG 3392 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | || |||||||| ||||| ||||| | || | ||| || |||||| || ||| | Sbjct 3393 GGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGA 3452 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || || ||||||||||| | ||| || || || || ||||| Sbjct 3453 CTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| ||||||| ||| || |||| || | || | ||||| || || Sbjct 4861 AATTTGCATACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTT 4920 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | |||||| || || | ||||||||| || || || | | || || Sbjct 4921 ATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTG 4980 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || |||||||||||||| ||||| | ||| | ||| ||||| ||| Sbjct 4981 ATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCT 5040 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| ||||| || || || |||||||| || | |||||| ||||| || |||||||| Sbjct 5041 CGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| ||||| || |||| ||||| || | || || ||| ||||| ||| Sbjct 3500 ATACCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCG 3559 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | |||||| ||||| ||||| | | || || || ||| Sbjct 3560 GAAAGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGA 3619 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| ||||||||||| ||||||| || | ||| || || || | ||| Sbjct 3620 GGAATTCCCTCTTTATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCT 3679 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || || || || || | ||||| || || |||||||| Sbjct 3680 ACTTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 >seq15454 Length=877 Score = 145 bits (160), Expect = 1e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| || || |||||||||||| ||| || ||||| |||||||| || ||||| | Sbjct 217 AATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATTAAACG 158 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || ||||| || ||||| |||||||| ||||| | ||| | |||| || || Sbjct 157 TTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCTATCGT 98 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| || ||||| ||||| ||||||||||| || || ||||| || || || || Sbjct 97 ATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGAAAATCTG 38 Query 193358 CAT 193360 ||| Sbjct 37 CAT 35 >seq48073 Length=7537 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || | || |||| ||| | |||| ||||| ||| || Sbjct 6749 AATTTGCATTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTT 6690 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||| || |||| || || |||||||||||||| || || ||||| || || Sbjct 6689 ATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTG 6630 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| ||||| ||||||| ||| | |||| ||| |||||||| Sbjct 6629 GTCGGGTGGGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGA 6570 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||| || | || || |||||||| || | ||||||||||| ||||||||| Sbjct 6569 CGGTTCAACCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||| | || | ||||| |||||| Sbjct 5609 AATTTGCATACCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATT 5550 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || || | || || || ||||||||||| |||||||| | ||| || Sbjct 5549 GTAGTCGCTCAAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTG 5490 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||||||||| ||||| | ||| | |||| ||| || ||||| Sbjct 5489 GTCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGA 5430 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || ||||||| || || || || || || || ||||| ||||| || ||||| || Sbjct 5429 CGGTTCGACTTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||| | |||| ||||| |||||| Sbjct 6293 AATTTGCATACCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATT 6234 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||| | || | || || || ||||| ||||| || || |||||||| || Sbjct 6233 ATAATCGCTGAGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTG 6174 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||||||||||||||| |||| ||| | ||| || || ||||| Sbjct 6173 GTCGGGTGGGATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGA 6114 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || || ||||| || || |||||||| ||||| |||||||| Sbjct 6113 CGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||||||||| |||||||| | ||| || || || || || ||||||||| Sbjct 6439 TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTA 6380 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| ||| ||||| || | || ||||| || || || Sbjct 6379 TCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATG 6320 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| |||| |||||| ||||| |||||||| Sbjct 6319 GTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| || || |||||||||| || || || || || || ||||||||| Sbjct 5983 TCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTA 5924 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | ||| || ||||| || | || || || || || ||| Sbjct 5923 TCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATA 5864 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | ||||| || || ||||||||| Sbjct 5863 GTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||| || ||||| || |||| ||| || ||||| || |||||||||||| Sbjct 6895 TCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTA 6836 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | ||| ||||||||||| | || || || || || || Sbjct 6835 TCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATC 6776 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | ||||| || || ||||||||| Sbjct 6775 GTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 >seq8389 Length=28122 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| ||||||||||||| ||||| |||| |||| |||| || || || || Sbjct 12743 CCTTCTTTGTCTTGTATTTTGGCTTTTACATTTTCAATACTATCACTAGGTTCGACCTCA 12684 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || |||| ||||| || || ||||||||||| Sbjct 12683 AGGGTGATAGTCTTGCCCGTTAAAGTTTTAACGAAAATTTGCATTTT 12637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898978512140640