Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq37708 167 2e-36 seq48073 131 2e-25 seq15454 122 8e-23 seq3858 111 1e-19 seq8389 93.3 4e-14 seq4462 89.7 5e-13 >seq37708 Length=8338 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||||||| | || |||||||| || || ||||||||||| | | | Sbjct 5097 ATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCCGAGC 5038 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || |||||||| |||||||| || ||||||||||| Sbjct 5037 GACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGATCAG 4978 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || ||||| || || || |||| | | || || |||||| Sbjct 4977 CAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTATAAC 4918 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || |||||||| | ||| || | || || Sbjct 4917 ATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGG 4871 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | ||||| ||||| ||||| |||||||| || | | | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||||||||| || |||||||| ||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| |||||||| || ||| || | | |||| |||||||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || | || ||||| | || ||| | || || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || |||||||| || || |||||||| || | | | Sbjct 3501 ATGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGC 3442 Query 24764 GACACAGTAGAAA-CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| | ||| ||||||||||||||||| || ||||| ||||| Sbjct 3441 GATACGATCGAAAACGTTAAGGCGAAA-ATCCAAGACAAAGAAGGTATCCCTCCGGATCA 3383 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || || ||||| || ||||| || ||| |||| | || |||||||| Sbjct 3382 GCAACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAA 3323 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || | |||||||| |||||| | || || || Sbjct 3322 TATTCAAAAGGAGTCTACGTTGCACTTGGTATTGCGACTTCGTGGTGG 3275 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| ||||||||||||| || || |||||||| || | | | Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || |||||||||||||||||||| || ||||||||| Sbjct 3897 GATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAA 3838 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| ||||| || || ||| |||| | || || || ||| Sbjct 3837 CAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAAC 3778 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || || || || | |||||| | || || Sbjct 3777 ATCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGG 3731 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | ||||| || || || ||| | |||||||| ||| Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || ||||| ||||| ||||| |||||||| || Sbjct 3669 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 3610 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || || ||| | | | | || ||||||||| Sbjct 3609 CAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAAC 3550 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||||||||| || || || ||||| | ||||| Sbjct 3549 ATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATT 3512 >seq48073 Length=7537 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||| ||||||||||||| |||||| | |||||||| | || Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||| | ||||| || ||||| ||||| || || ||||| || Sbjct 5661 GATACCATCGAGAACGTTAAAGC-TAAGATTCAGGACAAGGAAGGCATCCCACCCGACCA 5719 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||| |||||||| || |||| || ||| || |||||||| Sbjct 5720 ACAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 5779 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| || ||||| || || || |||||| Sbjct 5780 CATTCAGAAAGAATCTACGCTTCATTTGGTG 5810 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||||||| ||||||||||||| ||||| || ||||||||| | | Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || || |||||||| || || ||||| || Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || || || ||||| |||||| |||| || ||| || ||||| ||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||| || || || || ||||| || ||||| Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCG 6499 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||| |||||| | || || ||| | || Sbjct 6513 ATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTCC 6572 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || |||||||||||||| || || ||||| || Sbjct 6573 GATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCAG 6632 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| |||| || ||| || ||||||||| Sbjct 6633 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 6692 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||| || ||||| |||||| Sbjct 6693 ATTCAGAAAGAATCTACGCTACATTTGGTG 6722 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| | ||||| || || |||||||| || |||||| | || Sbjct 6741 ATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTCC 6800 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || || || || ||||||||||| || || || || Sbjct 6801 GATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCAG 6860 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || |||||| |||| || | | || ||||| ||| Sbjct 6861 CAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAAC 6920 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || ||||| || || ||||| || || | || ||||| Sbjct 6921 ATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGG 6967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| | ||||| || ||||||||||| || |||||| | | Sbjct 5829 ATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATCA 5888 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| |||||||| || || ||||| || Sbjct 5889 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAG 5948 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 ||||| || || || || || ||||| Sbjct 5949 CAACGATTAATTTTCGCTGGCAAACA 5974 >seq15454 Length=877 Score = 122 bits (134), Expect = 8e-23 Identities = 143/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || ||||||||||| || |||||||| ||| | | Sbjct 34 GATGCAGATTTTCGTGAAAACCCTTACGGGTAAAACTATCACTCTCGAAGTCGAACCTTC 93 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| || ||| || || ||||| || ||||| || |||||||| || Sbjct 94 GGATACGATAGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCCGACCA 153 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||||| ||||| ||||| || || |||| ||| |||| | || ||||| || Sbjct 154 GCAACGTTTAATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACGTTATCTGATTACAA 213 Query 24883 CATTCA-AAAGG 24893 ||||| ||||| Sbjct 214 TATTCAGAAAGG 225 >seq3858 Length=10210 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 || |||||||| ||||||| |||||||||||||| || || || ||||||||||| ||| Sbjct 7100 CTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGTTCCTAAATTTTGATGA 7041 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||| ||||| || || |||||||| || | ||| || ||||| |||||||| | ||| Sbjct 7040 TTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGTCCCAGTTTCAATTTG 6982 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 138505 ATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCA 138564 || ||||||||||| || | || ||||| | || ||||| || |||| || Sbjct 7925 ATTACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCG 7866 Query 138565 AACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAA 138624 || |||||||| ||||| | ||| ||||| || | ||| || ||||| || | | Sbjct 7865 AAGGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGT 7806 Query 138625 AGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAA 138684 | ||||||| || ||||| | || ||| ||| || | || | ||| ||||| ||| Sbjct 7805 AACGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAA 7746 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACAT 138722 | | || || |||||||||||||||||||| || Sbjct 7745 TTAGTTGGCTTGACATTCCACATATCGTACTGTAAAAT 7708 >seq8389 Length=28122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| ||||||||||||||||| || || || ||||| || || ||| || Sbjct 12831 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAG 12890 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 || | || ||||| ||||||||||| |||||||| | || || || || ||||| | Sbjct 12891 AACTCTTTCTGATTACAACATTCAAAAAGAATCGACGTTGCATTTAGTATTACGATTAAG 12950 Query 24925 CGGAGG 24930 ||||| Sbjct 12951 AGGAGG 12956 >seq4462 Length=45351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||||| |||||| || |||| ||||| || || | || ||||||||| Sbjct 16296 TACTCCACGATTTCGGTACACAAGTTGCTACTTTTGATAGTTCCAAGGTTCTGTTGATTG 16355 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||| || ||||| ||||||||||| ||||| || || || || ||||| | ||| | Sbjct 16356 GATTTACGATTACAGGCATCTTTGTACAGCATGTAAGGCGTTCCTGTTTCTATTTGAGAA 16415 Query 139243 TCTA 139246 |||| Sbjct 16416 TCTA 16419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449559603180560