Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq37708 107 1e-18 seq15454 91.5 1e-13 >seq37708 Length=8338 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| || | |||| ||||| ||||||||||| || || ||| | || |||| Sbjct 3518 AGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCT 3577 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || |||||||| || || ||||||||||| | || | ||||| || || Sbjct 3578 TCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 3637 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | | || | ||| ||| ||| || || | || |||||| Sbjct 3638 TGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTC 3697 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| || || ||||| ||||| Sbjct 3698 TTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| ||||| ||||| || | | |||| || || |||||||||||||| Sbjct 3310 CTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAA 3369 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || |||||||| || | || | || || ||||| | ||||| || ||| Sbjct 3370 AATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTT 3429 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | |||| || | | |||||| || | ||| ||||| || || || | ||||| || Sbjct 3430 TTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGAC 3489 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 3490 GAAGATCTGCAT 3501 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| || || || ||||| || ||||| ||| | | |||| Sbjct 4430 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCT 4489 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || |||||||| || |||| | || ||||| || Sbjct 4490 TCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCT 4549 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | |||| ||| | | |||||| || | || || ||| Sbjct 4550 TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTC 4609 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| || || |||||||| Sbjct 4610 TTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| || || || |||||||||||||| ||| | | | || Sbjct 4886 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCT 4945 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| |||||||| || |||||||| || | || | || || || || Sbjct 4946 TCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCT 5005 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||||| | | || | || | | ||| || || | ||| ||||| Sbjct 5006 TGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTT 5065 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | || || |||||||||||||| Sbjct 5066 TTACCAGTCAACGTTTTAACAAAGATCTGCAT 5097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| |||||||| || | | |||| || ||||| || ||||||||| Sbjct 3767 TCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAG 3826 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| || || | || | || || ||||| | ||||| ||| ||| | Sbjct 3827 ATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTT 3886 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | | |||||| || | || || || || || || | |||||||| Sbjct 3887 TCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACG 3946 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 3947 AAAATCTGCAT 3957 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| ||||||||||| || | | | || || ||||| || |||||||| Sbjct 3995 TCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAA 4054 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | ||||||||||| | || | ||||| || || | ||||| ||||| | Sbjct 4055 ATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTT 4114 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | | |||||| || | || ||||| ||||| || | ||| ||||| Sbjct 4115 TCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACG 4174 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 4175 AAAATTTGCAT 4185 >seq15454 Length=877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 |||||||| || || || |||| | | |||| |||| |||||||||||||||||| Sbjct 222 TTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATT 163 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||||||||| | || | || ||||| || | ||||| |||||| | || Sbjct 162 AAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCT 103 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||| || | ||||| || | || || || || ||||| ||||| || || || Sbjct 102 ATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGAAA 43 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 42 ATCTGCAT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325454232263138