Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq37708 159 5e-34 seq48073 132 8e-26 seq8389 114 2e-20 >seq37708 Length=8338 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || ||||| ||||| | || || || | || || Sbjct 4412 TGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGCG 4353 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||||||||| |||||| ||| |||||| || ||||| ||||| || | Sbjct 4352 ACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAGC 4293 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||||| || || ||||||| | | ||||| || | Sbjct 4292 AACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAACA 4233 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| |||||| | ||||| || | ||||| || ||||||| Sbjct 4232 TCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGGTA 4185 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| || ||||| || |||||||| || | || || || | || || Sbjct 3956 TGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGCG 3897 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || ||| ||||| ||| |||||||| || ||||||||||||| Sbjct 3896 ATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAAC 3837 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || ||||||||| | || ||| ||||| | | || || || | Sbjct 3836 AACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAACA 3777 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| | |||||||| | ||||| ||||| |||| Sbjct 3776 TCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGGTA 3729 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || || || ||||| ||||| | || || || | || || Sbjct 4868 TGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGCG 4809 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || |||||| ||| ||||||||||| || ||||| |||| Sbjct 4808 ACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAAC 4749 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| | || ||| || || || | |||||||||| Sbjct 4748 AACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAATA 4689 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||||| ||| | || || ||||| |||| Sbjct 4688 TCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGGTA 4641 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || ||||||||||| || || | || || || | | || Sbjct 4184 TGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGCG 4125 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||||| ||| |||||| || ||||| ||||| || | Sbjct 4124 ACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAGC 4065 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||| | || || ||| || | | || ||||||| Sbjct 4064 AACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAATA 4005 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||||||||| | ||||| || || ||||| ||||| |||| Sbjct 4004 TTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGGTA 3957 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || || || || || || || || || | || || || | || | Sbjct 4640 TGCAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGTG 4581 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || ||||| ||| ||| ||||||||||| |||||||| | Sbjct 4580 ACACGATTGAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGCATTCCGCCCGATCAGC 4521 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || |||||||| | || ||| |||||| | | ||||| || | Sbjct 4520 AACGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTACAACA 4461 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || || || | ||||||||||| |||| Sbjct 4460 TCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGCGGTA 4413 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || ||||| || || | || ||||| | | || Sbjct 5096 TGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCCGAGCG 5037 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || ||| ||||| ||| |||||||||||| || |||||||| | Sbjct 5036 ACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGATCAGC 4977 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| | || || |||||| | | || ||||| | Sbjct 4976 AACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTATAACA 4917 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || || || | ||| | ||||| |||| Sbjct 4916 TCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGGTA 4869 Score = 109 bits (120), Expect = 9e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| ||||| || || | || || || | || || Sbjct 3500 TGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGCG 3441 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || || ||||| ||| |||||||| || || || ||||| | Sbjct 3440 ATACGATCGAAAACGTTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCAGC 3381 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || || || || | || ||| ||||||| | | |||||||||| Sbjct 3380 AACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAATA 3321 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAA 146264 | ||||| || || || | || || ||||| ||| | | || ||||| ||| Sbjct 3320 TTCAAAAGGAGTCTACGTTGCACTTGGTATTGCGACTTCGTGGTGGTAATTAA 3268 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || || || || || | || ||||| | | | Sbjct 3728 TGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGTG 3669 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || || ||||| ||| |||||| || ||||| ||||| || | Sbjct 3668 ACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAGC 3609 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || || |||||| | || ||| | || | | |||||||| | Sbjct 3608 AACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAACA 3549 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||| || | ||||||||||| |||| Sbjct 3548 TTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGGTA 3501 >seq48073 Length=7537 Score = 132 bits (146), Expect = 8e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | ||||| || || ||||| || ||||| | || ||||||| || | Sbjct 5830 TGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATCA- 5888 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || |||| || ||| ||||| ||| ||||||||| || |||||||| || Sbjct 5889 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAG 5948 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | ||||| || || ||||||||||| || | || || | || || ||| Sbjct 5949 CAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACAAT 6008 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || || |||||||| ||| | |||||||| ||||| Sbjct 6009 ATCCAGAAAGAATCCACTCTTCATTTAGTTTTACG 6043 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| ||||| | || ||||||| | Sbjct 6286 TGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCTG 6345 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| |||||| || ||||||||||||||||||||| || | Sbjct 6346 ATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAGC 6405 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || ||||| || || || |||| || | ||||| || | Sbjct 6406 AGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAACA 6465 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | |||||||| || || | || ||||| || || Sbjct 6466 TTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCG 6499 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || |||||||| || || | || || |||| || Sbjct 6058 TGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCCG 6117 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || ||| || |||||| ||||||||| || |||||||| || | Sbjct 6118 ACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAGC 6177 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || |||||||| || || || | || | | |||||||||| Sbjct 6178 AGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAATA 6237 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || ||||||| || ||||| Sbjct 6238 TTCAAAAAGAATCTACCCTCCATTTGGTTTTACG 6271 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||| || || || | || || |||| || Sbjct 5374 TGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACCGTCCG 5433 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| |||||| ||| ||||||||| || |||||||| || | Sbjct 5434 ACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAGC 5493 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || ||||| || || || | || || | || || |||| Sbjct 5494 AGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACTACAATA 5553 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | ||||| || || || Sbjct 5554 TTCAAAAAGAATCCACCCTTCATTTGGTCTTGCG 5587 >seq8389 Length=28122 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||||||||| || ||||||||| | | ||||| || ||||||||| | || ||| || Sbjct 12831 AGGCATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAG 12890 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| | | ||||| || || |||||||||||||| | |||||||||||||||||||| Sbjct 12891 AACTCTTTCTGATTACAACATTCAAAAAGAATCGACGTTGCATTTAGTATTACGATTAAG 12950 Query 146252 AGGAGG 146257 |||||| Sbjct 12951 AGGAGG 12956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785575772837840