Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3858 86.0 1e-11 seq19309 84.2 5e-11 >seq3858 Length=10210 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 |||| ||| | ||||| ||||| |||||| |||| |||| || || |||||| | |||| Sbjct 6608 CATTCGCTGTTTATCTGGAACCATGGCATGCAGACGTATTCGAGTTTTTAGAATTACGTA 6667 Query 110815 AAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 ||||| ||| ||||||| | || | |||||||||||||| | ||||| | | Sbjct 6668 AAAATACCGGACATGAAGAAATTCGTGCTAGAGATTTATTTTATGCGTTATGGATCCCCG 6727 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 || ||| ||| | | || || || | || | ||| | | ||||| ||| || | Sbjct 6728 ATGAATTTATGCGAAGAGTAGAACAAGAAGGAAAATGGAGTTTGATGTGCCCTAGTCAGT 6787 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA-CGAAA 110985 |||||| || ||| | ||| |||| |||||| | || || ||||| Sbjct 6788 GTCCTGGACTTCAAGATTGTTGGGGAGAAGAATTTGAAAAGCTGTACCGAAA 6839 >seq19309 Length=25488 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | ||||||||||||||||||||| | |||| ||||| || || ||||| | ||||| Sbjct 20052 CATCATACCACCAGCATTATCGAATTC-TCCGCAATAATTAGGAGCCGAAAACAAAGTAA 19994 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 ||| || | || || ||||||||||| ||||||||||| Sbjct 19993 CTAGTTGTCTTTTCGCGAAAAATTCATAACCGTCTTCAACAAC 19951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185898886644022