Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq37708 141 6e-29 seq48073 125 5e-24 >seq37708 Length=8338 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || | ||||||||||| ||| ||||||||| |||||||||||||| Sbjct 4186 ACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGA 4245 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | |||| ||||||||||| ||||| ||||| | ||| ||||| || | || Sbjct 4246 GAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 4305 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || |||||| | | |||| || | ||||||||| | || | Sbjct 4306 AATTCCCTCTTTATCTTGAATTTT-AGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAA 4364 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || |||||||| || || || ||||| || ||||| |||||| Sbjct 4365 CTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCATA 4414 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || ||||| |||||| ||||| || |||||||| || || Sbjct 3730 ACCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGA 3789 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| ||||| || || | ||| || ||||| | || Sbjct 3790 GAGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGG 3849 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| |||| || | || | || ||||| | || | Sbjct 3850 GATTCCTTCTTTGTCTTGGATTTTGGCTTTC-ACGTTTTCGATCGTATCGCTAGGCTCGA 3908 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| |||||||| ||||| || ||||||||| Sbjct 3909 CTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCATA 3958 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | |||||||| | || |||||||| || || |||||||| Sbjct 4642 ACCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGA 4701 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || | ||||| |||||||| |||||||| || || || | || Sbjct 4702 CAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGG 4761 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| ||| |||| || | |||||||| | || | Sbjct 4762 GATGCCTTCTTTGTCTTGGATTTTAGCCTTC-ACATTTTCGATAGTGTCGCTAGGCTCGA 4820 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || |||||||| || || || |||||||| || || |||||| Sbjct 4821 CTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCATA 4870 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| || | ||||| || || || |||||||| ||||| || || || Sbjct 4870 ACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGA 4929 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | ||||||||| || || || | ||| |||||||| | || Sbjct 4930 AAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGG 4989 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| ||| | | | || | |||||||| | || | Sbjct 4990 GATGCCTTCTTTATCTTGGATTTTCGCTTTGA-CGTTTTCGATAGTGTCGCTCGGCTCTA 5048 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || |||||||| |||||||||||||| Sbjct 5049 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCAT 5097 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || || ||||| || | || ||| ||||| || || ||||| || Sbjct 3274 ACCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGA 3333 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | || |||||||| ||||| | ||| |||||||| | || Sbjct 3334 AAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGG 3393 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | ||| | || | || ||||| | || | Sbjct 3394 GATACCTTCTTTGTCTTGGATTTTC-GCCTTAACGTTTTCGATCGTATCGCTAGGCTCGA 3452 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||||||||| ||||| || || |||||||||||| Sbjct 3453 CTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCATA 3502 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || || | ||||| || || || |||||||| ||||||||||| || Sbjct 4414 ACCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGA 4473 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||||| ||||| || || | ||| |||||||| |||| Sbjct 4474 AAGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGG 4533 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||||| | | |||| || | ||||| || | || | Sbjct 4534 AATGCCTTCCTTATCTTGAATTTTC-GCCTTGACATTTTCAATCGTGTCACTAGGCTCGA 4592 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || || || || || || ||||||||| Sbjct 4593 CTTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCATA 4642 >seq48073 Length=7537 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||||||||| || ||||| || ||||| |||||| | || || |||| || Sbjct 6722 CACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTC 6663 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||||||||||||||| || ||||| | ||||| || | || | |||||||||||| Sbjct 6662 CAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTG 6603 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| ||||| ||| ||| ||| ||| | ||| || || | ||| || |||| Sbjct 6602 AATTTTGGCTTTCA-CATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTT 6544 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||||||||| || ||||| Sbjct 6543 TACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || ||| |||||||| || ||||| ||| Sbjct 5600 ACCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCT 5541 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| |||| ||||| ||||||||||| ||||| || |||||||| || | || Sbjct 5540 CAAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGG 5481 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || |||| || | ||||||| | ||| | Sbjct 5480 GATACCTTCTTTATCTTGAATTTT-AGCTTTGACATTTTCAATGGTGTCGGACGGTTCGA 5422 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 5421 CTTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| |||||||| || || ||||||||| |||||||||||| || || || | Sbjct 6956 ACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACC 6897 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||| ||||| || ||||| ||||| |||||||| || |||| | |||||||| Sbjct 6896 GTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTT 6837 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || |||||| ||| || | || | || ||| | ||| || || | ||| | Sbjct 6836 ATCCTGAATTTTGGCCTTC-ACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAA 6778 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || ||||| || || || ||||| Sbjct 6777 TCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| || || || || || || ||||||||| |||||||||||| Sbjct 6511 CCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTC 6452 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| ||||| ||||||||||| ||||| || |||||||| || | || Sbjct 6451 AAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGA 6392 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || |||||| | || || | || | || || | ||| || Sbjct 6391 ATGCCTTCTTTATCCTGAATTTT-AGCTTTGACGTTTTCAATCGTATCAGACGGTTCTAC 6333 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || |||||||| ||||||||||| ||||| || |||||| Sbjct 6332 TTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCATA 6284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328463226579840