Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq48073 125 2e-23 seq37708 104 6e-17 seq15454 104 6e-17 >seq48073 Length=7537 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| |||||||| ||||| |||||||||||| || ||||| ||||| Sbjct 6072 AAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCCGACACCATCGAAAAC 6131 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||| ||||| |||||||| || || ||| || ||| | ||||| Sbjct 6132 GTCAAAGC-CAAGATACAAGATAAAGAAGGTATCCCACCCGACCAGCAGAGATTGATCTT 6190 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||||||||||| || | ||| | |||||| || | || ||||| || Sbjct 6191 CGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAATATTCAAAAAGAATC 6250 Query 206364 TACTCTTCACCTTGTTTT 206381 ||| || || | ||||| Sbjct 6251 TACCCTCCATTTGGTTTT 6268 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || || ||||| || || ||||||| ||| ||||| || | ||| Sbjct 6300 AAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCTGATACGATTGAAAAC 6359 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || |||||||| ||| || ||| || | | || || Sbjct 6360 GTCAAAGCTAAA-ATTCAGGATAAAGAAGGCATTCCACCCGACCAGCAGCGGTTAATTTT 6418 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||||||||||| || | |||||| |||||||||| | || |||||||| Sbjct 6419 CGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAACATTCAAAAAGAGTC 6478 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| | || ||| Sbjct 6479 AACCCTTCACTTAGTCTTGCGTCTCCGA 6506 Score = 111 bits (122), Expect = 4e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-AT 206242 ||| ||| | || || ||||| || || |||||||| || || || || |||| | Sbjct 5615 CAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCCGATACCATCGAGAA 5674 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | |||||| || |||||| || || ||||| || || ||| |||||| | |||| Sbjct 5675 CGTTAAAGCTAA-GATTCAGGACAAGGAAGGCATCCCACCCGACCAACAAAGATTGATCT 5733 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| ||||| |||||||| || | |||||| |||||| ||| | |||||||| | Sbjct 5734 TCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAACATTCAGAAAGAAT 5793 Query 206363 CTACTCTTCA 206372 |||| ||||| Sbjct 5794 CTACGCTTCA 5803 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || ||||| || ||||| ||| || ||| Sbjct 5376 CAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACCGTCCGAC 5435 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| |||||||| |||||||| || || ||| || Sbjct 5436 ACCATTGAAAATGTCAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCACCCGACCAGCA 5494 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||||||||| ||||||||||| ||| | |||||| ||| ||||| | Sbjct 5495 GCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACTACAATAT 5554 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||||| | || ||| | || || Sbjct 5555 TCAAAAAGAATCCACCCTTCATTTGGTCTTGCGTCTCCG 5593 Score = 109 bits (120), Expect = 1e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || ||||| || ||| || || || | ||| Sbjct 6528 AAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTCCGATACCATTGAAAAT 6587 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || ||| |||||| | ||||| Sbjct 6588 GTGAAAGCCAAA-ATTCAAGACAAAGAAGGTATCCCACCCGACCAGCAAAGATTGATCTT 6646 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || |||||||| || | |||||| |||||| ||| | |||||||| || Sbjct 6647 CGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAACATTCAGAAAGAATC 6706 Query 206364 TACTCTTCA 206372 ||| || || Sbjct 6707 TACGCTACA 6715 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| ||||| || |||| || ||| || || || ||||| Sbjct 6756 AAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTCCGATACTATCGAAAAC 6815 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||||||||| ||| ||| || || | ||||| Sbjct 6816 GTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCAGCAGCGATTGATCTTT 6875 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||||||||| || | ||| || |||||||||| | || |||||||| Sbjct 6876 GCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAACATTCAAAAAGAGTCG 6935 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | ||||| | ||||| Sbjct 6936 ACCCTTCATTTGGTTTTACGTCTTCG 6961 >seq37708 Length=8338 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || | || || || || ||||| |||||||| || | |||| Sbjct 4638 CAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGTGAC 4579 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| || ||||| ||| ||| || ||| Sbjct 4578 ACGATTGAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGCATTCCGCCCGATCAGCAA 4519 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||| | |||||||| || || | | ||||||||| || Sbjct 4518 CGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTACAACATC 4459 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| || || |||||| | ||| Sbjct 4458 CAAAAAGAATCAACCCTTCACTTGGTT 4432 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || |||||||| || | ||||| || | ||||| ||||| Sbjct 4398 AAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGCGACACCATCGAAAAT 4339 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| ||||| |||||| || ||| ||| | || || ||| Sbjct 4338 GTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAGCAACGTCTCATTTTC 4279 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||||||| || || || | ||||||||||| |||| |||||||| Sbjct 4278 GCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAACATCCAAAAAGAGTCG 4219 Query 206365 ACT 206367 ||| Sbjct 4218 ACT 4216 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| ||| | || || ||||| ||||| | ||||| || | || Sbjct 3954 CAGAT-TTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGCGA 3896 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 || ||||| || ||||| ||| || ||||| ||||||||||| || || | Sbjct 3895 TACGATCGAAAACGTGAAAGCCAAA-ATCCAAGACAAAGAAGGAATCCCACCCGATCAAC 3837 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 || | || ||||||||||| || || | ||||||||||| ||| | | || |||||| Sbjct 3836 AACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAACA 3777 Query 206351 TCCAGAAAGAGTCTACTCTTCA 206372 |||||||||| || ||||| || Sbjct 3776 TCCAGAAAGAATCCACTCTGCA 3755 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | ||||| ||||| ||||| | ||||| || | || Sbjct 3498 CAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGCGAT 3439 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| || || ||||| |||||||| || ||||| ||| Sbjct 3438 ACGATCGAAAACGTTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCAGCAA 3379 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| | |||||||| || || | | ||||| || | Sbjct 3378 CGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAATATT 3319 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||| | || ||| ||||||| Sbjct 3318 CAAAAGGAGTCTACGTTGCACTTGGTATTGCGACTTCG 3281 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || |||||||| || | ||||| || | ||||| ||||| Sbjct 4854 AAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGCGACACTATCGAAAAT 4795 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| |||||||| || || ||| ||| | | ||||| Sbjct 4794 GTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAACAACGTTTGATCTTT 4735 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||||||||| ||| ||||||| || |||| ||||| ||| Sbjct 4734 GCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAATATCCAAAAAGAATCT 4675 Query 206365 AC 206366 || Sbjct 4674 AC 4673 >seq15454 Length=877 Score = 104 bits (114), Expect = 6e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||| | ||||| ||| ||| || || | ||| Sbjct 50 AAAACCCTTACGGGTAAAACTATCACTCTCGAAGTCGAACCTTCGGATACGATAGAAAAT 109 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| || || ||| ||| | | ||||| Sbjct 110 GTCAAAGCTAAA-ATTCAAGATAAGGAAGGTATCCCTCCCGACCAGCAACGTTTAATCTT 168 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 |||||||||||| ||||||||||| || || || | |||||||| | ||||||| Sbjct 169 CGCCGGAAAGCAATTGGAAGATGGTAGAACGTTATCTGATTACAATATTCAGAAAG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180910730767942