Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq48073 134 1e-26 seq37708 95.1 1e-14 seq8389 82.4 6e-11 >seq48073 Length=7537 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| |||||||| || |||||||| |||| ||||| Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | ||| | |||||| |||||| ||||||||||| | || || || Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 6631 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||| | || | || || |||||||| ||||| |||| || ||||||| || Sbjct 6632 GCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 6691 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || ||||||||||| |||||||| || | |||||||| || ||| Sbjct 6692 CATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTTACGTGGTGGA 6740 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| || || || || ||||||||| ||||| |||||| Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || ||||||||| | || || || Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | |||| || || ||||| || ||||| |||| || ||||||||||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||| || || || || ||||| ||| | | ||||| ||| Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCGTCTCCGAGGTGGA 6512 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| |||||||| ||||| || ||||| ||||| |||| |||||| Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| || | | | ||||| |||||| || |||||||| | || ||| || Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCA 6859 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| || ||||| || ||||| | ||| || |||||||||| Sbjct 6860 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAA 6919 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGATA 106495 ||| |||||||| || || || ||||| || || | | || ||||| || ||||| Sbjct 6920 CATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGGTTATTGATA 6976 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || || || || || || |||||||| ||||| ||| || | Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| || ||| ||||| |||||| | || || ||| Sbjct 5661 GATACCATCGAGAACGTTAAAGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCAA 5720 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | || || || ||||| ||||| |||| || ||||||| ||| Sbjct 5721 CAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 5780 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||||||||| || ||||| || | |||||||| || ||| Sbjct 5781 ATTCAGAAAGAATCTACGCTTCATTTGGTGCTCAGGTTACGTGGTGGA 5828 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| |||||||| ||||| || ||||| ||||| |||| |||||| Sbjct 5828 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATC 5887 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | |||||| |||||| || |||||||| | || || || Sbjct 5888 AGATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 5947 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| || ||||||||||||||||| || || |||| ||||| Sbjct 5948 GCAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACAA 6007 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATT 106471 || || |||||||| || || |||||||| || Sbjct 6008 TATCCAGAAAGAATCCACTCTTCATTTAGTTTT 6040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| || ||||| |||||||||||||| | ||||| |||||||| ||| | ||| || Sbjct 5366 TTTCAAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGA 5425 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 ||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 5426 ACCGTCCGACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACC 5485 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 || || || || | |||| || || ||||| || ||||| ||| || |||| Sbjct 5486 CGACCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGA 5545 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| || ||||||||||| || || ||||| || ||| Sbjct 5546 CTACAATATTCAAAAAGAATCCACCCTTCATTTGGTCTTG 5585 >seq37708 Length=8338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| ||||| ||||| || |||||| | ||| || || || Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | ||||| ||||| |||||||||||| | || || ||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| |||||||| | |||||| | || || |||||| || Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || |||||||||||||| | ||||| ||| Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTA 4660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||||||||| |||||||| || ||||| ||| | ||| ||| || Sbjct 5101 AAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCC 5042 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 |||| || | | | || ||| ||||| || ||||||||| | || || Sbjct 5041 GAGCGACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGA 4982 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| ||| | || || | || || |||||| | ||||| || ||| | || || Sbjct 4981 TCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTA 4922 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGT 106468 ||||| ||||||||||| || || || || || Sbjct 4921 TAACATCCAAAAAGAATCAACCCTTCACTTGGT 4889 >seq8389 Length=28122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 |||||||||| | | |||| || || |||||| | |||||| | |||| | || Sbjct 12843 TGATCAACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCTGA 12902 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||||||| ||||||||||| || | ||||||||||| | ||| |||||||| Sbjct 12903 TTACAACATTCAAAAAGAATCGACGTTGCATTTAGTATTACGATTAAGAGGAGGA 12957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402034896334016