Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq48073 150 2e-31 seq37708 107 2e-18 seq28516 82.4 7e-11 >seq48073 Length=7537 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||||||| | ||||||||||| |||| || || |||||||| |||||| Sbjct 6741 TTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGC 6682 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| |||| |||| || || || || || ||||| | |||||||| | | Sbjct 6681 TCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTG 6622 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | || ||||| ||| ||| |||| || | || | | || ||| || ||| Sbjct 6621 GGATACCTTCTTTGTCT-TGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCA 6563 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| ||| || |||||||| ||||||||||| ||||| || ||||||| Sbjct 6562 ACCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATTC 6511 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 || |||||||| | || ||| |||||||||||||||||| || || || |||| Sbjct 6952 AAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCT 6893 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||| ||||| ||||| ||||| ||||||||||| | || | | || || ||| Sbjct 6892 TCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCC 6833 Query 35645 ATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||| ||| || |||| || | | || ||| || ||| ||||||| ||| ||||| Sbjct 6832 -TGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGT 6774 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || ||||||||||| || || || ||||||| Sbjct 6773 CTTTCCGGTCAAAGTTTTAACGAAAATTTGCATTC 6739 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||||||| | ||||||||| | |||| || || |||||||| |||||| Sbjct 5829 TTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGC 5770 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| |||| |||| ||||| || || || ||||| | || ||||| | | Sbjct 5769 TCAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTG 5710 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | || ||||||||| ||| || |||| | ||| | | || ||| || || Sbjct 5709 GGATGCCTTCCTTGTCC-TGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCT 5651 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||| || |||||||| || || || || || || || ||||| Sbjct 5650 ACTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | ||| || || || | || ||| |||||||||||||||||| Sbjct 6513 TTCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGC 6454 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| |||| |||| ||| || || || || || |||||||||||||| | | Sbjct 6453 TCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTG 6394 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || || || ||| ||| ||| || || | || | | ||| || || ||| Sbjct 6393 GAATGCCTTCTTTATCC-TGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCT 6335 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || |||||||| || || ||||| ||||| || ||||| Sbjct 6334 ACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | || || |||||||| ||||| ||| | Sbjct 5599 CCACCACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTC 5540 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| ||| || || || || || |||||||||||||| | || Sbjct 5539 AAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGG 5480 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||| | ||| ||| || || | | || | | |||||| || ||| || Sbjct 5479 ATAC-CTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGAC 5421 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 5420 TTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 >seq37708 Length=8338 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 35500 CTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTT 35559 || || ||| |||||||| | | ||| ||||| || |||||| |||||||||||| || Sbjct 3265 CTATTAATTACCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATT 3324 Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619 ||||| | | |||| | || || |||||||| || || || || | || ||||| Sbjct 3325 ATAATCCGAAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTG 3384 Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679 |||| ||| | | || ||||| ||| || ||| | || | | ||| ||||| Sbjct 3385 ATCCGGAGGGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCT 3444 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || | ||||| |||||||| ||||| || || || || |||||||| Sbjct 3445 AGGCTCGACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||||||||| || ||| ||||| ||||||||||||| | |||| |||| || Sbjct 4204 CACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTC 4263 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || ||||| || || || | || |||||||| | ||||| | ||| || | | | Sbjct 4264 CAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTAT-CTT 4322 Query 35647 GATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| | ||| | | || | | |||||||| | || || || | || ||||||| Sbjct 4323 GAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTTT 4382 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| |||||||| || || ||||| Sbjct 4383 TGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| ||||||||||| | | ||||| | || || ||||| ||||| || || Sbjct 4451 TCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAG 4510 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 || | || ||||| || | |||| || ||||| | | ||| ||| | ||| | | | Sbjct 4511 ATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTAT-CTTGAATTTTCGCCTTGACATT 4569 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| || | || || |||| ||||| || ||||| ||||| || || || Sbjct 4570 TTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGAC 4629 Query 35725 AAATATCTGCAT 35736 ||||||||||| Sbjct 4630 GAATATCTGCAT 4641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| | | |||||||| | || |||||||||||||| ||||||| Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAA 3562 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || || || || || || || | || |||||||| | |||| Sbjct 3563 AGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGA 3622 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| || | | ||| ||| | ||| | || | | ||||| || | || || Sbjct 3623 ATTCCCTCTTTAT-CTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 3681 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || ||||| |||||||| || || ||||| Sbjct 3682 TTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 >seq28516 Length=38763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || ||||| |||||||| || ||| || ||||| ||||| || |||| | ||| || Sbjct 20540 AATCTCAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCGGAAAGGGTACGT 20481 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633 | || || ||||||||||| || || ||||| || |||||||| | ||||| || Sbjct 20480 CCATCTTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGC 20426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450454930038160