Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq39349 149 9e-31 seq27620 136 5e-27 seq4462 136 5e-27 seq3858 104 3e-17 >seq39349 Length=17693 Score = 149 bits (164), Expect = 9e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | ||| || || || |||| ||| ||||| |||||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||| ||||||||| |||| ||||| | ||||| |||||| |||| | ||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 |||| |||||||| || || || ||| || ||||||||||| || |||||| ||| Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | | |||| |||||| ||| ||| | ||| || ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 || |||||| |||||||||||| || || || ||||||||||| || | ||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || |||||| |||||||||||| || ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 39761 ACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAGCT 39817 | | ||||||||| || | | | | || |||||| | ||||| || ||| Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 39818 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 || | || ||||||||||| ||||| || |||||||| ||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAAAT 11435 >seq27620 Length=20860 Score = 136 bits (150), Expect = 5e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| ||||| || || ||||| || | || ||||| || ||||| | ||||| || | Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || |||||||||||||| |||| ||||| | |||||| || ||| | | || | || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | ||||||||||| || || |||||| || ||||||||||| || || ||| ||| Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | |||||| |||||| ||| ||| | ||| || ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 136 bits (150), Expect = 5e-27 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || |||||||||||||| || | |||||| ||||| ||||| |||||||| ||| Sbjct 18251 AAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATCGCAGCAAAGCTTCCG 18192 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 |||||||| || ||||| || || ||||| |||| | | || | || | | | Sbjct 18191 GAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCAGCAAAAGTAGCGCTT 18132 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || | |||||| ||| ||||| || ||||||||||||||||||||||||||||| Sbjct 18131 TGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACACAAGGCATTGTTTCA 18072 Query 39845 ATAGCATTAAAGAGATAAT 39863 || ||||| || ||| ||| Sbjct 18071 ATGGCATTGAACAGAAAAT 18053 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 39312 ACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTT 39371 |||| ||||| |||| | |||||| ||||| | ||||||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 39372 CCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| || ||||||||||| |||||||| ||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||||||||| || |||||||| || || || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || |||| ||| || || | ||| |||| ||| || | || || || || || Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 || | | | ||| |||||||| || | |||||||||||||| || || || || Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 39625 GTCACAATGTAGGCCCTCAT 39644 || ||||| |||| || Sbjct 18368 ATCGGTATGTAAACCCTAAT 18349 >seq4462 Length=45351 Score = 136 bits (150), Expect = 5e-27 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTT 69602 |||||| |||||||| || |||||||| || ||| || | || | ||| ||| | Sbjct 16594 CAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCT 16653 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 |||||| ||| || ||||| || || || | ||| || | | | |||||| || Sbjct 16654 CATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTT 16713 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || | |||||| ||| || | || || | |||||| |||||||| ||||| | || Sbjct 16714 ACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 | || | | || |||| ||| || ||||| ||||| | |||||||| |||||||| Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 ||| || | |||||||| | | |||||| ||| ||| ||||| |||| ||| || || Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 105 bits (116), Expect = 9e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| || || ||||||||||| || ||| | ||| ||||||||||||||||| || Sbjct 15786 GATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCACAACTTGCCTCCAAA 15845 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 |||||||||||||| ||||| ||||||| |||| || ||| | || ||| ||| Sbjct 15846 GCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGGGATTGCTCACTCTCG 15905 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||| | | |||||| || || ||||| |||| || || || || || Sbjct 15906 AATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATACCTATTCCAATCGGC 15965 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 ||||| ||| ||| || | || ||| Sbjct 15966 CTATGCCTCAGATTCGATCGTTTAGC 15991 >seq3858 Length=10210 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| |||||||| |||| | || || || || ||||| ||||| | ||| Sbjct 7919 TGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAGGAT 7860 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || |||||||| | |||||||||||| || || || |||||||| || | | ||| | Sbjct 7859 TCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAACGAA 7800 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || || | ||| | | | | ||||| ||||| | ||||||||| | || || | Sbjct 7799 TTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAATTAGTT 7740 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || |||||||| | |||||| |||| ||| Sbjct 7739 GGCTTGACATTCCACATATCGTACTGTAAAAT 7708 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||| | || || |||||| |||||| || || || |||| Sbjct 8351 TCCAGCCGTAGAAGTGCATAGAAGATAAATTTGAATAATTTGGATTCGCCATGTGTATAT 8292 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||| |||||| ||||||||||| | ||| || |||||||| | || ||| Sbjct 8291 TTAAGCTTTGTGATTGATCTATGAAAGCTCCACGATCGGCTGCCATTTTCAAAACGGTCT 8232 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||| |||||||||| ||| ||| | | || || | || ||| |||| Sbjct 8231 TTTGTTTGATTTCCCAAACAGTTTTATACAGCTCCTTCAAATTATCCGGAA 8181 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 70003 AATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA 70062 || || ||||| || |||||||| || || |||| || | || || || || || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 70063 GCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 |||| || |||||| ||| | |||||||| | ||||| ||||||||||| ||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 || ||| || || || |||||||| | || || ||||| | ||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || ||| ||| ||||| ||||||||| ||| | | ||||||||| | | | || ||| Sbjct 6833 TACAGCTTTTCAAATTCTTCTCCCCAACAATCTTGAAGTCCAGGACACTGACTAGGGCAC 6774 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 ||||| ||| | || | | |||| | ||||||| |||||| ||||| | Sbjct 6773 ATCAAACTCCATTTTCCTTCTTGTTCTACTCTTCGCATAAATTCATCGGGGATCCATAAC 6714 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || ||| | |||||| | | | ||||||||| ||| |||||||| | || | | Sbjct 6713 GCATAAAATAAATCTCTAGCACGAATTTCTTCATGTCCGGTATTTTTACGTAATTCTAAA 6654 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 ||||| | | || | |||||||||||| ||||| Sbjct 6653 AACTCGAATACGTCTGCATGCCATGGTTCCAGATA 6619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686392742591280