Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4462 214 1e-50 seq27620 123 2e-23 seq39349 120 2e-22 seq26537 102 6e-17 >seq4462 Length=45351 Score = 214 bits (236), Expect = 1e-50 Identities = 253/343 (74%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||||||||||||||||| || || || | | ||||||||||||| | || | Sbjct 38500 AGGTGATCTTGGTCCTGTTTACGGGTTCCAATGGAGACATTTTGGAGCCGAGTACAAAGA 38559 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 |||| || |||||||||| || ||||| || |||||| | || ||| ||||| ||||| Sbjct 38560 TATGCACACTGATTATACAAACAAAGGCATCGATCAACTTCAAAACGTCATAGACACGAT 38619 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 |||| ||||||| || | ||||| | ||||| ||||| || | || ||| Sbjct 38620 TAAAAATAATCCCGACGATAGAAGAATAATCCTATGCGCTTGGAATCCCATTGATTTACC 38679 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 | ||||| || || || ||||| | || |||||||||| ||||| ||||| Sbjct 38680 TAAAATGGCCTTACCTCCGTGTCACTGCTTGGTGCAGTTTTACGCAGTTAATGGCGAACT 38739 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || |||||| |||||||| |||| | || ||||| || || || || || ||||| || Sbjct 38740 ATCGTGTCAAATGTATCAACGATCTGCCGATATGGGTCTTGGTGTACCTTTCAACATCGC 38799 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 ||||| |||||||||||||||||||||| || ||||| ||| Sbjct 38800 CAGTTACTCTCTGCTCACGTATATGATTGCTCATGTTACAAAT 38842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 40687 ATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGT 40746 |||||||||| | || || || ||| | |||||||||||| | | ||||||| || Sbjct 38254 ATCAGTTTCCACTACTGACCACGAAACGCGTATTTTGGAAAGGCGTCGTAGAAGAATTGC 38313 Query 40747 TATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTT 40806 ||||||| || | || | || ||||| || ||||||| |||| |||||| | |||| Sbjct 38314 TATGGTTCATTAGGGGATCCACGAATGCGAAAGAATTATCCGAAAAAGGAGTTAAAATTT 38373 Query 40807 GGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAG 40866 |||| || | ||| | | | ||| | | | ||||||| |||| || || |||| Sbjct 38374 GGAACCCGAATAGTACCAGAGAATACCTAGATTCCTTAGGATTTAAAGACAGAGAAGAAG 38433 Query 40867 GT 40868 || Sbjct 38434 GT 38435 >seq27620 Length=20860 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||||| |||||||| | || || || ||||| || |||||||| || || || Sbjct 17776 AAACCCGAAGAAAAAAAATTCATTTCACACGTTTTAGCATTTTTTGCGGCATCTGATGGT 17835 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || |||||||||||||| || || || |||||||||||| | |||||||| || Sbjct 17836 ATTGTCAATGAAAATTTAGTCGAGCGTTTCTTTCAAGAAGTTCAAATTCCAGAAGCCAGA 17895 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 | ||||| || |||||||| ||||||||||| | ||||| || |||||||| | || Sbjct 17896 TTCTTTTACGGATTTCAAATCACCATAGAAAATGTACATTCCGAGATGTACAGCTTATTG 17955 Query 44000 ATAGATACGTACATCAAAGAT 44020 ||||| || ||| | || ||| Sbjct 17956 ATAGACACCTACGTTAAGGAT 17976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 |||| ||||| || |||||| | ||| | || | ||||| |||||||| | |||| Sbjct 18059 TGTTCAATGCCATTGAAACAATGCCTTGTGTAAAGAAGAAAGCGGACTGGGCGTTGAAAT 18118 Query 44100 GGATAAAT--TCAAAT-GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 ||||| | ||||| | | |||||| ||||| | | |||||||| | || |||| Sbjct 18119 GGATAGCTGATCAAAGCGCTACTTTTGCTGAACGGGTCATTGCGTTTGCTGCCGTCGAAG 18178 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | ||||||||||| ||| ||||| || ||||| ||| | || || |||| | |||| Sbjct 18179 GTATTTTCTTTTCCGGAAGCTTTGCTGCGATATTCTGGCTTAAAAAGAGAGGCCTAATGC 18238 Query 44217 CTGGGTTGACGTTTTCA--AATGA 44238 |||| |||| ||||| ||||| Sbjct 18239 CTGGACTGAC--TTTCAGTAATGA 18260 >seq39349 Length=17693 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||||| |||||| | | || || || || || || |||||||| || ||||| Sbjct 11146 AAACCCGAAGAAAGAAAATTCATTTCACATGTCTTAGCATTTTTTGCAGCCTCTGACGGT 11205 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || ||||||||||| ||||| || ||| ||||| || ||| | || ||||| || Sbjct 11206 ATTGTCAATGAAAACTTGGTCGAACGTTTTTTCCAAGAGGTGCAAATCCCCGAAGCCAGA 11265 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 | |||||| ||||||||||| | || |||||| | ||||| || ||||||||| | || Sbjct 11266 TTTTTTTACGGGTTTCAAATAACAATTGAAAATGTACATTCAGAGATGTACAGTTTGTTG 11325 Query 44000 ATAGATACGTACATCAAAGAT 44020 || || || || ||||||||| Sbjct 11326 ATTGACACTTATATCAAAGAT 11346 Score = 105 bits (116), Expect = 5e-18 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101 |||||||| || ||||| | ||| | ||| |||||||||||||| | | |||| Sbjct 11443 TTTAATGCAATTGAAACCATGCCTTGTGTCAAAAGAAAAGCAGACTGGGCGTTAAGATGG 11502 Query 44102 ATAAAT--TCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158 ||| ||| || | |||||||||| || | | |||||||| | ||| ||||| Sbjct 11503 ATAGCGGATCAGAACGCGACTTTTGGAGAGAGAATCATTGCGTTTGCTGCTGTCGAAGGG 11562 Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 ||||||||||| ||| |||||||| ||||||||| | || ||| | || | |||||| Sbjct 11563 ATTTTCTTTTCTGGAAGTTTTGCGGCTATATTTTGGCTTAAAAAAAGGGGCCTAATGCCT 11622 Query 44219 GGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAG 44258 || |||| ||||| || || |||||| | | || |||| Sbjct 11623 GGTCTGAC--TTTCAGTAACGAATTAATATCTAGAGACGAAG 11662 >seq26537 Length=19045 Score = 102 bits (112), Expect = 6e-17 Identities = 253/376 (67%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| || || ||||||||| | | || || || ||| | || ||| | ||| | || Sbjct 5750 GTGCTGGGATATTTAGGACTATGGAAGAAGTCTGGTAAATTGTTGTTTTTGGGGCTCGAT 5809 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335 || ||||||||||| | ||| | |||||||| ||| || | | | | ||| Sbjct 5810 AACGCAGGAAAAACTACCTTATTACACATGCTGAAAGACGACAGATTAGCTCAACATGTA 5869 Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395 || || ||||| || || |||||| || || | |||| | || | ||| | ||||| Sbjct 5870 CCAACTTTACACCCCACGTCTGAAGAATTATCTATTGGTAATATGAAATTCACTACATTC 5929 Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGAT 47455 ||| | || ||||| |||||| | ||| ||||| || ||||||||| | || ||| Sbjct 5930 GATCTTGGCGGACATTCTCAAGCCAGAAGAGTGTGGAAAGATTATTTTCCAGCTGTGGAT 5989 Query 47456 GCTATAGTTTATATTG-TAGACTGT-GCAGATTTGACTAGACTGACAGAGGCAAAAATCG 47513 || ||||||| | ||| | || ||| |||||| | || | | || | | | | Sbjct 5990 GCCATAGTTT-TCTTGATTGA-TGTATCAGATTCCGGTCGATTTAATGAAAGTAGAGTAG 6047 Query 47514 AATTCGATGCGTTGTTAAACGATGAA-CTGTTACACGATGTTCCTATTTTAGTGTTGGGC 47572 || | | || || |||||||| ||| || | || | || ||| |||||| | || || Sbjct 6048 AACTAGCTGGTTTATTAAACGACGAAGCTTTGTCATGCTG-TCCAATTTTAATATTAGGA 6106 Query 47573 AATAAAATCGACAAAC 47588 || |||||||| |||| Sbjct 6107 AACAAAATCGATAAAC 6122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397164866212510