Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq48073 127 2e-24 seq37708 123 2e-23 seq4462 116 3e-21 seq39349 91.5 1e-13 seq28516 84.2 2e-11 >seq48073 Length=7537 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || ||||||||||||||||||||||||| | || || Sbjct 5587 CGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCG 5528 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||| |||||| |||| | ||||| || || || || | ||| |||||| Sbjct 5527 TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTA 5468 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||| | |||| | ||||| | | ||| ||||||| || || Sbjct 5467 TCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATG 5408 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||||||| ||||| || ||||| Sbjct 5407 GTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || || |||||||| | ||||| |||||||||||||| || ||||| Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| | ||||||||||||| | || | | ||| || || || || Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| |||||| ||| | | |||| | ||||| | | ||| ||| Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||| || || || ||||| ||||| ||||||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCATA 6056 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || |||||||| | || || ||||||||||| ||||| |||||| Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| | ||||||||| || | || | ||||| || || ||||| Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| || ||| |||| | |||| | ||| || | | ||| || Sbjct 6847 ATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACC 6788 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || |||| |||||| || || |||||||| Sbjct 6787 TCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || || ||||| | || || ||||| || |||||||||||||||| | | || || Sbjct 6043 CGTAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCG 5984 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || ||| |||| | || || || || || || | ||| |||||| Sbjct 5983 TCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTA 5924 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||||| | |||| | || |||| | ||| || || || || ||| Sbjct 5923 TCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATA 5864 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||| |||||| || || |||||||| Sbjct 5863 GTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 5829 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || || || | || || ||||||||||| ||||| ||||||| | || || Sbjct 6499 CGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCG 6440 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||| |||||| |||| | ||||| || || || || | || |||||| Sbjct 6439 TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTA 6380 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||| | | |||| | || || | | ||| ||||| || || || Sbjct 6379 TCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATG 6320 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || | ||||| ||||| ||||||||| Sbjct 6319 GTTTTACCGGTTAACGTTTTAACAAAAATTTGCATA 6284 >seq37708 Length=8338 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | ||||||||||| || || |||||||| || ||||| ||| Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||||||| | |||||||||||| |||||||||| || || || || || Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| || || || | |||| | ||||| | | |||||| Sbjct 4307 ATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACT 4366 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||| |||||||| |||||||||||| Sbjct 4367 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCATA 4414 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| ||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | |||||||||| |||||||||||| |||| | ||| || || || || || Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| || ||| || | |||| | ||||| | | || ||| Sbjct 4079 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACT 4138 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | ||| || |||| ||||| || || ||||||||| || Sbjct 4139 TCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCATACCT 4189 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||||||| |||||||| |||||||| ||||| || ||| | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | |||||||||||||| ||||| | || | ||| ||||| || || || Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| || |||| |||| | |||||| | | || ||| Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACT 4822 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||| ||||| || || ||||||||| Sbjct 4823 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCATA 4870 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || |||||||| || || ||| | | | || | |||||| Sbjct 3521 ACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTCG 3580 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| |||||| |||| ||||| || || || || || | ||||||||||| Sbjct 3581 AGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGA 3640 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | |||| | ||||| ||| || ||||||| || || | ||| Sbjct 3641 ATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTTG 3700 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||||| |||||||||||| Sbjct 3701 CCGGTCAAGGTTTTCACGAAGATTTGCATA 3730 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || || | ||||||||||| || |||||||| || ||||||||||| || || Sbjct 3271 ATTACCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATC 3330 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 | | | | ||||||||||| || |||||| |||| ||||| || |||||||| Sbjct 3331 CGAAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGG 3390 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | ||| ||||| || ||| || || | | |||| | || || | | || Sbjct 3391 AGGGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTC 3450 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || || | ||| || |||| || || || ||||| |||||| Sbjct 3451 GACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCATA 3502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | || ||||| | || || ||||| || || |||||||| Sbjct 3731 CCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAG 3790 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||||||| |||||||||||| | |||||||| |||||||| || || Sbjct 3791 AGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 3850 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| ||| ||||| | |||| | || || | | || ||| Sbjct 3851 ATTCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACT 3910 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || || | || || || || || |||||| Sbjct 3911 TCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCATA 3958 >seq4462 Length=45351 Score = 116 bits (128), Expect = 3e-21 Identities = 300/450 (67%), Gaps = 18/450 (4%) Strand=Plus/Plus Query 131556 TTTCG-TACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAA--ATT-GGGACATTCG 131611 ||||| ||||| | || || |||| ||| | ||| ||| || || |||||||||| Sbjct 16553 TTTCGATACAATTTATCGAAATTTTCGCC---CTAACAGTCGAACAATCCGGGACATTCG 16609 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 |||||||||||| ||| |||| | |||||| || |||||||| ||| || Sbjct 16610 TTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGG 16669 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731 | ||||| |||||| || | ||| ||||| |||||| || ||| | |||||| Sbjct 16670 ATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTA-CCAGAGTTTTTTCG 16728 Query 131732 AA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC 131790 || | ||| || || ||||| || | |||||| |||||||| || ||||| | ||||| Sbjct 16729 AAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCC 16788 Query 131791 ------TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAA 131844 |||| || || ||||||| |||| | | |||| || ||||| || | Sbjct 16789 GGGTCTTTTG---TTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAG 16845 Query 131845 CATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCT 131904 ||| ||| | | ||| || | || || || | |||||||||| | |||| Sbjct 16846 CATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCTGTTTGTACCTCT 16905 Query 131905 GATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGT 131964 ||| || | | | |||| || || | ||||||| || | ||||| || || Sbjct 16906 GATGCAATGTATATGCAAACCAACTCCACCAGCTGATTTAGAAATCATAGCGCAATTCGT 16965 Query 131965 TAGAGTGTTATAGATACCTTCCACGCTGTC 131994 |||||||| | |||||||| | ||||| Sbjct 16966 TAGAGTGTGGAATATACCTTCGATACTGTC 16995 >seq39349 Length=17693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 108578 CTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTTT 108637 ||||||| | | ||| | ||||||||||| |||| ||| ||||| | || | ||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 108638 TAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACAATTGCAAACG 108697 ||| ||||||| ||||||||||| || ||||| || || || |||||| ||||||| Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 108698 CAACCATTCT 108707 ||| ||||| Sbjct 11542 CAATGATTCT 11533 >seq28516 Length=38763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | |||||||||||| || ||||| |||||||| || || |||||| Sbjct 20549 CCTCCTCTCAATCTCAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCGGAA 20490 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | ||||||||||| ||||| ||| |||| | ||| || || || || || Sbjct 20489 AGGGTACGTCCATCTTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGG 20431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424623138473424