Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq4462 114 1e-20 >seq4462 Length=45351 Score = 114 bits (126), Expect = 1e-20 Identities = 233/337 (69%), Gaps = 13/337 (4%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 || |||||||| || ||||| ||| |||||| || ||||| || || ||||| || ||| Sbjct 38832 TGAGCAATCATATACGTGAGCAGAGAGTAACTGGCGATGTTGAAAGGTACACCAAGACCC 38773 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTT---ATTTTGTGACACATAAAAT 111903 ||||| | |||| |||||| | ||||| ||||||| ||| || | ||||| Sbjct 38772 ATATCGGCAGATCGTTGATACATTTGACACGATAGTTCGCCATTAACTG---CGTAAAAC 38716 Query 111904 TG-ACAAAGTACATGACAAGGAGGCAATGCCATCCCA--TTCATAAA-GGGTCCCCATGC 111959 || || ||| | ||||| ||||| || ||||| | | || || ||| ||| || Sbjct 38715 TGCACCAAGCAG-TGACACGGAGGTAAGGCCATTTTAGGTAAATCAATGGGATTCCAAGC 38657 Query 111960 ACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAG 112019 || | ||| || ||||| || | |||||| || ||| || |||||| || || Sbjct 38656 GCATAGGATTATTCTTCTATCGTCGGGATTATTTTTAATCGTGTCTATGACGTTTTGAAG 38597 Query 112020 CTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATC-CAGTGTATGTTGCCCCATAGT 112078 || || || ||||| |||||||| | || ||| | |||| || ||| | | Sbjct 38596 TTGATCGATGCCTTTGTTTGTATAATCAGTGTG-CATATCTTTGTACTCGGCTCCAAAAT 38538 Query 112079 GTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC 112115 ||||||||||||| || |||| ||| || ||||| || Sbjct 38537 GTCTCCATTGGAACCCGTAAACAGGACCAAGATCACC 38501 Score = 109 bits (120), Expect = 4e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 112160 TAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATC 112219 || ||| || |||||||| || |||||||| ||||| ||| | ||||| ||||||| Sbjct 38388 TACTATTCGGGTTCCAAATTTTAACTCCTTTTTCGGATAATTCTTTCGCATTCGTGGATC 38329 Query 112220 CTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTA 112279 | ||||| ||||||||||||||||| || || |||||||| | || | ||| || || | Sbjct 38328 CCCTAATGAACCATAGCAATTCTTCTACGACGCCTTTCCAAAATACGCGTTTCGTGGTCA 38269 Query 112280 GCAGTGGAAA 112289 | |||||||| Sbjct 38268 GTAGTGGAAA 38259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391658502542626