Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4462 134 1e-26 >seq4462 Length=45351 Score = 134 bits (148), Expect = 1e-26 Identities = 235/340 (69%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 || || ||||| ||||| |||||||| |||||||| ||||||||||| || ||||| || Sbjct 38838 GTAACATGAGCAATCATATACGTGAGCAGAGAGTAACTGGCGATGTTGAAAGGTACACCA 38779 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || ||||| || | || | || || | |||||||| || || || | ||||| Sbjct 38778 AGACCCATATCGGCAGATCGTTGATACATTTGACACGATAGTTCGCCATTAACTGCGTAA 38719 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTTCC 30125 ||||| || | ||| |||||||| | |||| | ||| || || |||| |||| Sbjct 38718 AACTGCACCAAGCAGTGACACGGAGGTAAGGCCATTTTAGG--TAAATCAATGGGATTCC 38661 Query 30126 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30185 | ||||| | ||| || | || || || || || || | || ||| | | |||||| Sbjct 38660 AAGCGCATAGGATTATTCTTCTATCGTCGGGATTATTTTTAATCGTGTCTATGACGTTTT 38601 Query 30186 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 30245 | || ||||| | || | | || || | ||| || ||||||| ||||| | Sbjct 38600 GAAGTTGATCGATGCCTTTGTTTGTATAATCAGTGTGCATATCTTTGTACTCGGCTCCAA 38541 Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 |||| ||||| ||||||||||| || || || || || || Sbjct 38540 AATGTCTCCATTGGAACCCGTAAACAGGACCAAGATCACC 38501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406012780425384