Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq48073 127 1e-24 seq37708 120 2e-22 >seq48073 Length=7537 Score = 127 bits (140), Expect = 1e-24 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || |||| |||||||| || || || || || ||| ||||||||||| |||| || Sbjct 6511 CCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTC 6452 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| ||||| ||||||| | ||||| ||||| || ||||| ||||| ||||| || | Sbjct 6451 AAA--GTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTG 6394 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTC 34655 | | || || || || ||| ||| | ||| ||| | ||| || || || | || Sbjct 6393 GAATGCCTTCTTTATC-CTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGT-TC 6336 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || |||||||||||||||||||| |||||||| ||||| Sbjct 6335 TACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || ||||||||||| || || |||||||| |||||||| || || || Sbjct 6274 AGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGG 6215 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||||||||||| || || || | ||| ||||| || || | || || Sbjct 6214 CCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCT 6155 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || ||| ||| || | ||| ||| | || ||||| || | |||||||||| || Sbjct 6154 TTATCTTGTATC-TTGGCTTTGACGTTTTCGATGGTGTCGGACGGT-TCCACTTCCAAGG 6097 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| ||||| | |||||| |||||||| ||||| Sbjct 6096 TGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 102 bits (112), Expect = 5e-17 Identities = 163/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 |||||||| |||||||| || ||| || |||||||| || || || | ||||| | Sbjct 5590 AGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTA--C 5533 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | ||||||| | ||||| ||||| || ||||| ||||| ||||| || || | || | Sbjct 5532 GTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTT 5473 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCACTTCCAC 34664 | || ||| ||| ||| | ||| || | ||| ||||| || | || ||||| | Sbjct 5472 CTTTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGT-TCGACTTCTAA 5415 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||| || || || || || | ||||| |||||||||||||| |||| Sbjct 5414 GGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTTGA 5368 Score = 102 bits (112), Expect = 5e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTCGCTCGTCT 34554 ||||||||| || || || || ||||||||||||| || ||| ||||| ||||| Sbjct 5810 CACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAA--GTTCGGCCGTCT 5753 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||| || ||||| || || || | |||||||| || || | || |||||||| Sbjct 5752 TCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTGTC- 5694 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| || | ||||||| | || || || ||| ||||||| || || || Sbjct 5693 CTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATGGT 5634 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||||||||||| || || ||||| ||||| Sbjct 5633 TTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || |||||||| || || ||| ||||||||||| ||||| Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | |||||||| ||||| || || ||||| ||||| ||||| Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||| || || || ||| ||| | || ||| | || || || || | || | Sbjct 6847 ATTCCTTCTTTATC-CTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGT-TCTA 6790 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 6789 CCTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTCGCTCGTCT 34554 ||||||||| || || || || ||||||||||||| || ||| ||||| ||||| Sbjct 6722 CACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAA--GTTCGGCCGTCT 6665 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| ||||| || || || | || ||||| || || | || || |||||| Sbjct 6664 TCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCT 6605 Query 34615 GTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | ||| || | ||| || || || | || || |||| || || | Sbjct 6604 -TGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGT-TCAACCTCCAACGTAATGG 6547 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || ||||| |||||||| ||||| Sbjct 6546 TTTTACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 >seq37708 Length=8338 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | |||||||| || ||| |||||||||||||||||||| ||| Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAA 3562 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||| ||||| || || | ||| || ||||| || || Sbjct 3563 AGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGA 3622 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| || ||| ||| ||| | || ||| | || ||||| | ||| || Sbjct 3623 ATTCCCTCTTTATCT-TGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 3681 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| || |||||||| || || ||||| Sbjct 3682 TTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 114 bits (126), Expect = 8e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | ||||| |||||||| | || || |||||||| ||||| || || Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | ||||||| |||||||||||||| || |||||||| || ||||| || || Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGT--CTTCGCTCTCC 34656 | |||||| || ||| ||| ||| | || || | || |||| ||| | ||| Sbjct 4079 ATTCCCTCTTTATCT-TGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGG--CTCG 4135 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || ||||| || || || ||||| || ||||| ||||| Sbjct 4136 ACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 114 bits (126), Expect = 8e-21 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| | ||| ||| ||||| ||||| ||||| || || |||| ||||||| Sbjct 4204 CACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTC 4263 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 | |||||||||||| || || | ||| || ||||| || || | |||||| || ||| | Sbjct 4264 CAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT-T 4322 Query 34617 GATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCG 34672 || ||| | |||| | || ||| ||||| ||| ||||| | ||| |||| Sbjct 4323 GAATTTTAGCCTTTACATTTTCGATGGTG---TCGCTAGGCTCAACTTCGAGGGTAATCG 4379 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| || |||||||| || || ||||| Sbjct 4380 TTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 113 bits (124), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| ||||| || | || |||||||||||| |||||||| ||| Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| || || || ||||| || |||| ||| || || ||||| || Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT---CTC 34655 | || || |||||| ||| ||| | |||||| | || || ||||| ||| Sbjct 3395 ATACCTTCTTTGTCTTGGAT-TTTCGCCTTAACGTTTTCGATCGT---ATCGCTAGGCTC 3450 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || |||||||| || ||||| || || || |||||||| Sbjct 3451 GACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 113 bits (124), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || ||||| |||||| || || || ||||| || || || Sbjct 3731 CCACCTCTCAATCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAG 3790 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||||||||| || || | ||| ||||| || || || Sbjct 3791 AGAGTTCTTCCATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 3850 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT---CTC 34655 | ||| || |||||| ||| ||| | ||| ||| | || || ||||| ||| Sbjct 3851 ATTCCTTCTTTGTCTTGGAT-TTTGGCTTTCACGTTTTCGATCGT---ATCGCTAGGCTC 3906 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || ||||||||||||||||| || || ||||||||||| Sbjct 3907 GACTTCGAGTGTGATTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | || | ||||| || || || || ||||| ||||| ||||| ||| Sbjct 4415 CCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAA 4474 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| || ||||||||||| || || | ||| || || || ||||| Sbjct 4475 AGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGA 4534 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||| | || || | ||| ||||| ||| || Sbjct 4535 ATGCCTTCCTTATCT-TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGAC 4593 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || ||||| || || || || || || |||||||| Sbjct 4594 TTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314499062731766