Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4462 114 1e-20 >seq4462 Length=45351 Score = 114 bits (126), Expect = 1e-20 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 || || || ||||||||||| |||||||| ||||| || ||||| | | | | Sbjct 38510 GGTCCTGTTTACGGGTTCCAATGGAGACATTTTGGAGCCGAGTACAAAGATATGCACACT 38569 Query 34463 GACTATTCGGG-ACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAA 34521 || ||| | | ||| | || | || || || |||| || ||||| | || || Sbjct 38570 GATTATACAAACAAAGGCATCG-ATCAACTTCAAAACGTCATAGACACGATTAAAAATAA 38628 Query 34522 CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGC 34581 || || || ||||| || | | ||||| ||||| || | ||| | ||| ||||| Sbjct 38629 TCCCGACGATAGAAGAATAATCCTATGCGCTTGGAATCCCATTGATTTACCTAAAATGGC 38688 Query 34582 GCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCA 34641 | || ||||| ||| | | || || |||| | ||||| || || || || || Sbjct 38689 CTTACCTCCGTGTCACTGCTTGGTGCAGTTTTACGCAGTTAATGGCGAACTATCGTGTCA 38748 Query 34642 GCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGC 34701 | ||||||||||| | || ||||| | || || || |||||||| || |||||| | Sbjct 38749 AATGTATCAACGATCTGCCGATATGGGTCTTGGTGTACCTTTCAACATCGCCAGTTACTC 38808 Query 34702 TCTGCTCACGTACATGATCGCTCATGT 34728 |||||||||||| ||||| |||||||| Sbjct 38809 TCTGCTCACGTATATGATTGCTCATGT 38835 Score = 114 bits (126), Expect = 1e-20 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||| ||||||||||||| |||||| || |||||||| || || || | Sbjct 38835 ACATGAGCAATCATATACGTGAGCAGAGAGTAACTGGCGATGTTGAAAGGTACACCAAGA 38776 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | ||||||||||| | || || || || || ||||| | |||| || Sbjct 38775 CCCATATCGGCAGATCGTTGATACATTTGACACGATAGTTCGCCATTAACTGCGTAAAAC 38716 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || | | ||| ||||| || | ||||| ||| | ||| | || ||||| ||| Sbjct 38715 TGCACCAAGCAGTGACACGGAGGTAAGGCCATTTTAGGTAAATCAATGGGATTCCAAGCG 38656 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 || | | || ||||| || || || || || | ||||| || |||| || || Sbjct 38655 CATAGGATTATTCTTCTATCGTCGGGATTATTTTTAATCGTGTCTATGACGTTTTGAAGT 38596 Query 6857 TGGTCCGCTCCCTGT-CCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 || | || | ||| | | ||| || | | | | ||||| || ||||| || Sbjct 38595 TGAT-CGATGCCTTTGTTTGTATAATCAGTGTGCATATCTTTGTACTCGGCTCCAAAATG 38537 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCC 6942 |||||| ||||||||||| || || || Sbjct 38536 TCTCCATTGGAACCCGTAAACAGGACC 38510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447925631665440