Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq48073 129 4e-25 seq37708 96.9 2e-15 >seq48073 Length=7537 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| |||||||||||||| || || || | || |||||| Sbjct 5370 AAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACCG 5429 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || | ||| |||||| ||||| || ||||||||| | || | Sbjct 5430 TCCGACACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCG 5487 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| ||||||||||| ||||||||||| ||||| |||| ||| | ||| ||| | Sbjct 5488 ACCAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACT 5547 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||||| ||| | |||||||| |||||| | ||||| || Sbjct 5548 ACAATATTCAAAAAGAATCCACCCTTCATTTGGTCTTGCGTCTCCGTGGTGG 5599 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||||||||| || |||||| | || || || |||||| | || || ||| | | Sbjct 5828 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATC 5887 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || ||| ||||| || ||||||||| | || || Sbjct 5888 AGATACCATCGAAAA--CGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGAC 5945 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| |||||||| || || |||||||| || |||| ||| | |||| ||| ||| Sbjct 5946 CAGCAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTAC 6005 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| ||||| |||| | ||||| ||||| ||| | ||||| || Sbjct 6006 AATATCCAGAAAGAATCCACTCTTCATTTAGTTTTACGTCTCCGTGGTGG 6055 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || ||| ||||| | || || ||| | Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || |||||| ||||| || |||||||| |||| || | Sbjct 6345 GATACGATTGAAAAC--GTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACC 6402 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||||||||| ||||||||||| ||||| |||| || | ||| |||||||| Sbjct 6403 AGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACA 6462 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| || | || || || |||||| | || || || Sbjct 6463 ACATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCGTCTCCGAGGTGG 6511 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| |||||| | ||||| ||| ||||| | || || ||| | Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| |||||||||||| | || || Sbjct 6572 CGATACCATTGAAAAT--GTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGAC 6629 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || || || ||||||||||||||||| |||| || | ||| |||||| Sbjct 6630 CAGCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTAT 6689 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| || | |||||||| | | || ||||| || Sbjct 6690 AACATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTTACGTGGTGG 6739 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || |||||| | || || || ||||| | || || ||| | Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || || ||||| || |||||||| | ||| || || Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCA 6859 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| ||||| |||| || | || ||||||||| Sbjct 6860 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAA 6919 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||||||| || | ||||||||||| ||| | ||||| || Sbjct 6920 CATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGG 6967 >seq37708 Length=8338 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||||||||| || ||||| | || || ||| || ||| | || ||||| |||| Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| ||||| ||||| || ||||| || |||| || Sbjct 4125 GAC-ACGATCGAAAAT--GTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGAC 4069 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| |||||||| ||||| |||||| | || |||| | | | || || || Sbjct 4068 CAGCAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTAT 4009 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || ||||||||||||||||| ||| | ||||| Sbjct 4008 AATATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGG 3959 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 8/138 (6%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||| || |||| || |||||||| | ||||| ||||| ||||||||||| Sbjct 4320 GATAAAGAGGGAATTCCTCCCGACCAGCAACGTCTCATTTTCGCCGGTAAACAATTGGAA 4261 Query 27943 GACG----AACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| ||||| | |||||||||||||||||||||||| ||||| |||||||| Sbjct 4260 GACGGTAGAACGC----TCTCCGATTACAACATCCAAAAAGAGTCGACTTTACATTTGGT 4205 Query 27999 TTTGCGTTTGCGTGGCGG 28016 | || ||| | || || Sbjct 4204 GCTTCGATTGAGGGGAGG 4187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| ||||| | || ||||| | | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || || ||||| ||||||||||| | || || || Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || |||||||| ||||| | || || | | | | |||||||||||| || Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||||||||| | |||||| | || || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355601733238554