Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq37708 149 1e-30 seq48073 132 1e-25 seq15454 113 1e-19 seq28516 98.7 2e-15 seq8389 84.2 5e-11 >seq37708 Length=8338 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || || | |||||| || || ||||||||||||||||| |||| |||||| || Sbjct 4880 AGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTA 4939 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || || || || |||||||| || ||||| || || ||||| | ||||| Sbjct 4940 CCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCT 4999 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGA 211073 || || ||||| || ||| ||||||||||| ||||| ||| || || ||||| Sbjct 5000 TTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTC---GCTCGGCTCTACTTCGAGG 5056 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || | || || ||||| | ||||||||| Sbjct 5057 GTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 147 bits (162), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||| ||||| |||||||| || |||| || || ||||||||||| || || Sbjct 3755 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCGAGTTGT 3814 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || |||||||| || || || | |||||| ||||| ||||| || Sbjct 3815 TTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTTG 3874 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||||||||||||| || || ||| || || ||||| ||||| || || || Sbjct 3875 GCTTTCACGTTTTCGATCGTATC---GCTAGGCTCGACTTCGAGTGTGATTGTTTTACCG 3931 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | |||||||| || | |||||| Sbjct 3932 GTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 136 bits (150), Expect = 9e-27 Identities = 151/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||||||||| |||||||| | | ||||||||||||||| ||||| ||||| Sbjct 4673 GTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCGAGCTGTTTGCCG 4732 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | ||||||||||| ||||| | ||||| ||||| ||||| || ||| Sbjct 4733 GCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCCTTC 4792 Query 211038 ACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||| ||||| ||| || || ||||| || ||||| || || || | Sbjct 4793 ACATTTTCGATAGTGTC---GCTAGGCTCGACTTCGAGGGTAATCGTTTTGCCGGTCAAG 4849 Query 211095 GTCTTTACAAACACCTGCAT 211114 || ||||| || | ||||| Sbjct 4850 GTTTTTACGAAAATTTGCAT 4869 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || |||||||||||||| ||||||| |||||| || |||||| Sbjct 4430 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCT 4489 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| || ||||| || || || |||| |||||||| || Sbjct 4490 TCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCT 4549 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || ||||| || |||||| || || || | ||||| ||| Sbjct 4550 TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTC 4609 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 4610 TTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | || | ||| | || ||||| ||||| || |||||||||| ||| || Sbjct 3280 ACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGT 3339 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||| |||||||| || ||||| || || ||||| || || ||||| | || Sbjct 3340 TCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACC 3399 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 ||| ||||| ||||| || || ||||||||||| || || ||| || || || Sbjct 3400 TTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATC---GCTAGGCTCGACTTC 3456 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || || || | ||||| || || | |||||| Sbjct 3457 GAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || ||||| ||||||||||| | |||||| | |||||||| || || Sbjct 3527 TGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTCGAGTTGT 3586 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| ||||| ||||| ||||| ||||||| ||| || || || || || || Sbjct 3587 TTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTG 3646 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||||||||||||| | || || || | ||||| ||||| || || Sbjct 3647 GCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTTGCCGGTC 3706 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || || || | ||||| Sbjct 3707 AAGGTTTTCACGAAGATTTGCAT 3729 Score = 116 bits (128), Expect = 9e-21 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||||||||| ||||| | || || || || ||||||| || || || Sbjct 4216 AGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACC 4275 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || || ||||| ||||| ||||||| ||| || || || || || || || Sbjct 4276 GGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTT 4335 Query 211037 CACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || |||||||||||||| ||| ||||| ||||| || ||||| || || || | Sbjct 4336 TACATTTTCGATGGTGTC---GCTAGGCTCAACTTCGAGGGTAATCGTTTTGCCGGTCAA 4392 Query 211094 AGTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 4393 GGTTTTCACGAAGATTTGCAT 4413 >seq48073 Length=7537 Score = 132 bits (146), Expect = 1e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||| || ||||||||||| ||||| ||||| || Sbjct 6965 TCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAG 6906 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||||| ||| || || || ||||| | || || |||||||| || | Sbjct 6905 AGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGAT 6846 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| || ||||| || || |||||||||||||| || || || ||| ||||| Sbjct 6845 TCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTC 6786 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||||||||| || | ||| || || || | |||||| Sbjct 6785 CAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||||| ||||| ||||| || || || | ||||| | | ||| ||||| | || Sbjct 6031 TGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGG-TACGTCCGTCTTCTAATTG 5973 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| ||||| || | ||||| ||||| || || | ||||| || || || || || Sbjct 5972 TTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGAATTTT 5913 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||||||||||||| || || ||| ||||| || || || |||||||| || Sbjct 5912 CGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGTCTTTCCGGT 5853 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||| || || || | |||||| Sbjct 5852 CAAAGTTTTAACGAAAATTTGCATT 5828 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| || |||||||| || || | || ||||||| ||| Sbjct 6259 TGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGT 6200 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || ||||| || || | ||||| || || || ||||| Sbjct 6199 TTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTTG 6140 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||||||||||||||| || ||| || || | ||||| || ||||| ||| Sbjct 6139 GCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTG 6080 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 6079 AGCGTTTTAACAAAAATTTGCAT 6057 Score = 109 bits (120), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||| || || ||||| || ||||||||||| | ||| | || || ||||||| || Sbjct 5803 TGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGG-CCGTCTTCCAATTG 5745 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||| || || | |||||||||||||| ||||| Sbjct 5744 CTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTGTCCTGAATCTT 5685 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| |||||||| || || || || || | || || || || || || Sbjct 5684 AGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATGGTTTTACCGGT 5625 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 5624 TAACGTCTTGACGAAAATTTGCAT 5601 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTT 210963 ||| | |||||| || ||||||||||| ||||| ||||| | ||| || | || |||| Sbjct 6494 GACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAA-AGTTCGGCCGTCTT 6436 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||| ||| || || ||||| || | || || ||||| || |||| ||||| || |||| Sbjct 6435 CCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCT 6376 Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 | || || ||| |||||||| || || ||||| ||| || || || || || || | Sbjct 6375 GAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTT 6316 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || | || || ||||| | ||||| Sbjct 6315 TACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 105 bits (116), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || || || || ||||| || ||||||||||| | ||| || | || ||||||| || Sbjct 6715 TGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAA-AGTTCGGCCGTCTTCCAATTG 6657 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||| ||||| || || | ||||| ||||| || || || Sbjct 6656 TTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGAATTTT 6597 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||| ||||| ||||| || || ||||||||| | || || || || || || Sbjct 6596 GGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTTTACCAGT 6537 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||| |||||||| | |||||| Sbjct 6536 CAAAGTTTTTACAAAAATTTGCATT 6512 >seq15454 Length=877 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || || || ||||| | | || || |||||||||| ||||| || ||||||| Sbjct 224 CTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 165 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | ||||| ||||| ||||| | |||||||| || || || || ||| || |||| Sbjct 164 TTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTT 105 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || ||| || ||||||||||| || || ||||| || || || || | Sbjct 104 CTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGA 45 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 44 AAATCTGCAT 35 >seq28516 Length=38763 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||||||||||||||| || | |||||| | ||||||||| |||||||| || Sbjct 20520 AGTAGATTCTTTTTGGATGTTATAGTCGGAAAGGGTACGTCCATCTTCGAGCTGCTTACC 20461 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||| || | ||||| ||||||||||||| Sbjct 20460 AGCGAAAATCAAACGTTGCTGGTCAGGAGGAA 20429 >seq8389 Length=28122 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| ||||| ||||| | ||| || ||||||||||| || || || || Sbjct 12926 GTCGATTCTTTTTGAATGTTGTAATCAGAAAGAGTTCTTCCATCTTCAAGTTGTTTACCA 12867 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||| || | |||||||| |||||||||| Sbjct 12866 GCGAAAATCAAACGTTGTTGATCAGGAGGAA 12836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158259387033230