Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq37708 116 3e-21 seq48073 104 2e-17 >seq37708 Length=8338 Score = 116 bits (128), Expect = 3e-21 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| | || | ||||| || || || ||||||| Sbjct 4856 ACGAAAATTTG--CATACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTT 4913 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||| || | ||| |||| |||| || || ||||| || || || || |||| Sbjct 4914 GGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGAC 4973 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | ||||| |||| || | || ||||| || ||||||| ||||| | | | | Sbjct 4974 GTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAG 5033 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||||||| ||| || || | ||||| |||| || |||| ||||||||||||||| | Sbjct 5034 TGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCT 5093 Query 39281 GCATCTTT 39288 |||| ||| Sbjct 5094 GCATTTTT 5101 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| || | |||||||| || ||| || ||||| || |||||||||| | Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAA 3562 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || || |||||||| || || |||||||| |||||||||| || Sbjct 3563 AGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGA 3622 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||| || ||||| |||| | | | || || || | ||| || Sbjct 3623 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 3682 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || |||| ||||| || ||||||||||| Sbjct 3683 TCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-C 39116 || ||||| || || | |||||||| | ||| |||||||| ||||||||||||| | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || | | | || || ||||||||||| ||||| || | ||| || ||||||| || Sbjct 4703 AAG-GTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGG 4761 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||| |||||| || | | | | || ||||| | ||| || Sbjct 4762 GATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGAC 4821 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || |||| ||||| || || |||||||| Sbjct 4822 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || | ||| ||| ||||| ||||||||||| | ||| |||| | Sbjct 3287 CGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCA 3346 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || || || ||||| ||||| || | || | | |||||| Sbjct 3347 TCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTG 3406 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||||||| || | | | | ||||||||| | ||| || || | ||||| Sbjct 3407 TCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATG 3466 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| ||| || || ||||| ||||| Sbjct 3467 GTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||| || || || | ||||||||||| || |||||||| Sbjct 4172 ACGAAAATTTG--CATACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTT 4229 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||||| || |||| |||| || | ||||| || || || || |||| Sbjct 4230 GGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGAC 4289 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | |||||||||| || | | |||||| || ||||| || | | | | | Sbjct 4290 GTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGG 4349 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||||| | ||| || || | || || |||| || |||| ||||| || ||||||| Sbjct 4350 TGTCGCTAGGCTCAACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTT 4409 Query 39281 GCAT 39284 |||| Sbjct 4410 GCAT 4413 >seq48073 Length=7537 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| |||||||| || || |||||||| |||||||||||| || || || || Sbjct 6271 CGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCG 6212 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || || || || | | ||||||||||| || | | ||||| Sbjct 6211 TCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTA 6152 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||||| | | | || ||| || ||||| |||| ||||| Sbjct 6151 TCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATG 6092 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || |||||||||||||| |||||||| Sbjct 6091 GTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || || || || || ||||||||| || || |||||| | ||||| || Sbjct 6499 CGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCG 6440 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || || || || | ||||||||||||| || | || ||||| Sbjct 6439 TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTA 6380 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||||| ||||| | | | |||||| || || || |||| || || Sbjct 6379 TCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATG 6320 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | |||||||||||| |||||||| Sbjct 6319 GTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| |||||||| || || ||||||||| || || |||||| || || || || Sbjct 6955 CGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCG 6896 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 6895 TCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTA 6836 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||||| || | | | | |||||| || || || |||| ||| || Sbjct 6835 TCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATC 6776 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| |||||||| || |||||||| Sbjct 6775 GTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || ||| |||||||| ||||| || ||| | || ||| || Sbjct 5587 CGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCG 5528 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || || || || | ||||||||||||| || | | ||||| Sbjct 5527 TCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTA 5468 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||||| ||||| | | | || ||| || || || || | ||||| Sbjct 5467 TCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATG 5408 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || || ||||||||||| || |||||||| Sbjct 5407 GTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || || | ||| | | ||||||||||||||| ||||| Sbjct 6756 TAACGAAAATTTG--CATTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTT 6699 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || ||||||||| | ||||| |||| || | ||||| || || || || | Sbjct 6698 CTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAA 6639 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | |||||||||| || | | |||||||| ||||| ||| | | | | Sbjct 6638 TCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAAT 6579 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||||| || || || |||| ||| || |||| || |||| ||||| ||||| || Sbjct 6578 GGTATCGGACGGTTCAACCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAAT 6519 Query 39279 TTGCAT 39284 |||||| Sbjct 6518 TTGCAT 6513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429230960801126