Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq48073 159 8e-34 seq37708 158 3e-33 seq15454 118 3e-21 >seq48073 Length=7537 Score = 159 bits (176), Expect = 8e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || |||||||||||||| |||| |||||| ||| ||| || | || ||||||| || Sbjct 6031 TGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCGTCTTCTAATTGT 5972 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | |||||| |||||||| || |||||||| || ||||| || ||| Sbjct 5971 TTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGAAT-TTT 5913 Query 225631 TGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| ||||||||| ||||| | ||| || || | ||| || ||||| || || Sbjct 5912 CGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGTCTTTCCGGT 5853 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||||||||| | ||| | ||||||| Sbjct 5852 CAAAGTTTTAACGAAAATTTGCATT 5828 Score = 141 bits (156), Expect = 2e-28 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | || |||||| |||||||| || ||||| | || Sbjct 6715 TGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGT 6656 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || ||| |||||||| || |||||||| |||||||| || ||| Sbjct 6655 TTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGAAT-TTT 6597 Query 225631 TGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| |||| ||| ||||| || || | ||| || || ||||| || || || || || Sbjct 6596 GGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATGGTTTTACCAGT 6537 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||| || | ||||||| Sbjct 6536 CAAAGTTTTTACAAAAATTTGCATT 6512 Score = 134 bits (148), Expect = 3e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | || || |||||||||||||| | |||||| ||| |||||| Sbjct 5594 ACGGAGACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGT 5535 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||| || || ||||| || | || || |||||||| || ||||| Sbjct 5534 ACGTCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACC 5475 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || || ||| ||| |||||||| || | ||| || |||| Sbjct 5474 TTCTTTATCTTGAAT-TTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTA 5416 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| ||||| || || | |||||| | || | ||||| || Sbjct 5415 AGGTGATGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || |||||||| | ||||||||| || ||| | || ||||| | ||| Sbjct 6943 TGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCCAACTGT 6884 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || || Sbjct 6883 TTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGAATTTTG 6824 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| |||||| || || || | ||| || || | ||| |||||||| || ||| Sbjct 6823 GCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGTC 6764 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 |||||||| | ||| | ||||||| Sbjct 6763 AAAGTTTTAACGAAAATTTGCATT 6740 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | || |||||| |||||||| || ||||| | ||| Sbjct 5803 TGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTGC 5744 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 ||||| |||||||| | || |||||||||||| || || ||||||||||| || ||| || Sbjct 5743 TTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTGTCCTGAATC-TT 5685 Query 225631 TGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| | | | |||||||| || || | || || || ||||| || || || || || Sbjct 5684 AGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATGGTTTTACCGGT 5625 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 5624 TAACGTCTTGACGAAAATTTGCAT 5601 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||||||||| | ||| |||||| | ||| | || ||||| | ||| Sbjct 6259 TGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGT 6200 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || |||||||| || |||||||| || ||||| ||||| Sbjct 6199 TTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTTG 6140 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || || |||||||||||| || | |||||| || || ||||| || || || || Sbjct 6139 GCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTG 6080 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || | |||||| Sbjct 6079 AGCGTTTTAACAAAAATTTGCAT 6057 >seq37708 Length=8338 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| ||| ||||||| ||| || || |||||||| ||||| || || Sbjct 4673 GTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCGAGCTGTTTGCCG 4732 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | |||||||||||||| || || ||||| ||||||||||| || |||| Sbjct 4733 GCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTAGCCTTC 4792 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| ||||| | || || || | || ||||| ||||| ||||| ||| Sbjct 4793 ACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTT 4852 Query 225697 TTTATGAACACTTGCAT 225713 |||| ||| | |||||| Sbjct 4853 TTTACGAAAATTTGCAT 4869 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||| | || ||||||| | || | |||||||| || || Sbjct 3527 TGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTCGAGTTGT 3586 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| ||||| ||||| |||||||| ||||| || || || ||||| || || Sbjct 3587 TTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTG 3646 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || |||||||||||| || || || ||||||||||| |||||||| ||| Sbjct 3647 GCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTTGCCGGTC 3706 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | |||||| Sbjct 3707 AAGGTTTTCACGAAGATTTGCAT 3729 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||||||||||| |||||||| | | ||||| |||||| Sbjct 4430 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCT 4489 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || ||||| || ||||||||||| |||||||| ||| Sbjct 4490 TCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCT 4549 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| ||| || ||||| | || || || || ||||| ||| Sbjct 4550 TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTC 4609 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 4610 TTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || |||||||||||||| |||| ||||| || | | |||||| |||||||| || || Sbjct 3755 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCGAGTTGT 3814 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || |||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 3815 TTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGGAT-TTT 3873 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| |||||| || || | || || || | ||||| || || || || Sbjct 3874 GGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTTTTACCGGT 3933 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||| | ||||| Sbjct 3934 TAACGTCTTTACGAAAATCTGCAT 3957 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || |||||||||| |||||||||| | ||||| || ||||| | || || || Sbjct 4216 AGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACC 4275 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||| || || ||||| |||||||| ||||| || || || ||||| || || ||| Sbjct 4276 GGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTT 4335 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| |||||||||||| | || || || | || ||||| ||||| ||||| || Sbjct 4336 TACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTTTTGCCGGTCAAGGT 4395 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | |||||| Sbjct 4396 TTTCACGAAGATTTGCAT 4413 Score = 114 bits (126), Expect = 3e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || || | ||| || || ||||||||||||| || || || | | ||||| Sbjct 4880 AGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTA 4939 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| || || || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 4940 CCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCT 4999 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || |||||||| ||| || || || |||||| ||||| | || || || | || Sbjct 5000 TTATCTTGGAT-TTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGT 5058 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || || || ||||| ||||| | || | |||||||| Sbjct 5059 GATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | ||| | || || || ||||| | ||| ||||| | | || Sbjct 3280 ACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGT 3339 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| |||||||| || ||||| || || ||||| || || || || ||||| Sbjct 3340 TCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACC 3399 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| || |||||| || || | || || || | Sbjct 3400 TTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAG 3459 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| || || | ||| | ||||| Sbjct 3460 GGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| || || | | ||| || || ||||| || || || || Sbjct 3989 GTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCGTCTTCGAGTTGTTTACCG 4048 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||||| |||||||| ||||| || || || ||||| || || ||| Sbjct 4049 GCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTG 4108 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| ||||| | || || || | ||||| || || || ||||| ||| Sbjct 4109 ACATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTT 4168 Query 225697 TTTATGAACACTTGCAT 225713 |||| ||| | |||||| Sbjct 4169 TTTACGAAAATTTGCAT 4185 >seq15454 Length=877 Score = 118 bits (130), Expect = 3e-21 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATT--CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCT 225568 |||| | ||| || |||| || | ||||||||| | || ||||| |||||||| | | Sbjct 239 TGGAAACTGGGTTACCTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATT 180 Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| || |||||||| | ||||| |||||||| || ||||||||||| ||||| || | Sbjct 179 GCTTTCCGGCGAAGATTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAAT-T 121 Query 225629 TTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || || || ||| ||| || || || || | ||| || || | ||||| || || ||| Sbjct 120 TTAGCTTTGACATTTTCTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCC 61 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||||| | ||| | ||||| Sbjct 60 GTAAGGGTTTTCACGAAAATCTGCAT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191612883150788