Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq27620 149 5e-31 seq39349 131 1e-25 >seq27620 Length=20860 Score = 149 bits (164), Expect = 5e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 |||| ||| || | || || |||||||| | || ||| ||||| || ||||||| ||| Sbjct 17985 TTCAGCTGGATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATT 17926 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 |||||| | || ||||||||||||||| |||| ||||||| | ||||||||| | | | Sbjct 17925 TTCTATGGTGATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAA 17866 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 || | || ||||| ||||| || || ||||| ||| || |||||||| || ||||| Sbjct 17865 GAAACGCTCGACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAAC 17806 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || || || | | ||| || || || ||||||| ||| Sbjct 17805 GTGTGAAATGAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCA 17764 Score = 116 bits (128), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| |||||||| ||| || || | ||| ||||||| |||||||||| Sbjct 18280 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTT 18221 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 ||||||| ||||| || ||||| || |||||||| || ||||| ||||| ||||||| Sbjct 18220 TAAGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACG 18161 Query 4690 CTACTAATCG-GGACCCGAACGAGCTGGCTTTG-TCTTTAATCCATTTTAATGCCCAGTT 4747 | | | || | | || ||| |||||| || |||||||| || ||||||| Sbjct 18160 CAATGACCCGTTCAGCAAAAGTAGC--GCTTTGATCAGCTATCCATTTCAACGCCCAGTC 18103 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGT 4774 ||||| ||||| || || || ||||| Sbjct 18102 CGCTTTCTTCTTTACACAAGGCATTGT 18076 >seq39349 Length=17693 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||||||||||| || | | || ||||| || ||||||| |||||| || Sbjct 11348 GGATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATT 11289 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 | || ||||| |||||||| |||| ||||| | | ||| || || | |||| | | Sbjct 11288 GTTATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGT 11229 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || || |||||||| || || ||||||||| |||||||||||| || || ||||| || Sbjct 11228 TCGACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAA 11169 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || | ||| || || || ||||||| ||| Sbjct 11168 ATGAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCA 11134 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| || | ||||||| || || | || ||||||| || || |||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 |||||||||||||||| ||||| ||||||||||| || ||||| || || ||||||| Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTG-TCTTTAATCCATTTTAATGCCCAGTTA 4748 | | | || || || | | | | || || |||||| |||| ||||||| Sbjct 11542 CAATGATTCTCTCTCCAAAAG-TCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCT 11484 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 |||||| | || || || || || || | || || ||||||| Sbjct 11483 GCTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATA 11441 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 5043 AAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATA 5102 ||| | ||||||||| | |||||||| || ||||||||||||||| |||| | ||||||| Sbjct 11033 AAAACCACTTCTTCAGCTGTCCAAAATGAAGCTTCCGCTTTTTTGAACATGGCCCAAATA 10974 Query 5103 TCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || ||| | ||| || | ||| |||||||| Sbjct 10973 TCGTCATATTTAATAGGCATTATCACAAATCT 10942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426736789103966