Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq39349 154 2e-32 seq27620 131 2e-25 seq4462 122 1e-22 seq3858 95.1 2e-14 >seq39349 Length=17693 Score = 154 bits (170), Expect = 2e-32 Identities = 172/226 (76%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||| |||||| |||||||||||| || || ||||| |||||||| || | ||||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| ||||| ||| |||||||||||| || ||||| || || ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC-TTC-GTTGTG-TATCCACCGTTGTGCCCAATCAG 48339 | | | ||||||||| || | || ||| | | | |||||| | | ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | || | || ||||||||||| ||||| || |||||||| ||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAA 11437 Score = 136 bits (150), Expect = 5e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | ||||| || || || | ||| ||||| || || || | ||||||||||| Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||| ||||||||| |||| ||||| | ||| || ||||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 |||| || ||||| || || || ||| || |||||||||||||| |||||| ||| Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | | |||| | || ||||||| | ||| || ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||||||| || ||||| || | || ||||| ||||| || | |||||| || | Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || |||||||||||||| |||| ||||||| || || || || | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | ||||| ||||| || || |||||| || |||||||||||||| || ||| ||| Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | |||||| | || ||||||| | ||| || ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 47836 ACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895 |||| ||||| |||| | ||||| || || | ||||||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||| || |||||||||||||||||||||||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 Score = 89.7 bits (98), Expect = 7e-13 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || |||||| || || ||||| ||||| | ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC--ACTATT 48086 | || |||| ||| || || | ||| |||||||| || | ||||| || | || | Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 ||| | | | ||| |||| ||| | | ||||||||||||||| ||||||||| Sbjct 18428 TTCGGTAATTTC--TTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCA 18371 Query 48147 AAATC 48151 ||||| Sbjct 18370 AAATC 18366 >seq4462 Length=45351 Score = 122 bits (134), Expect = 1e-22 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010 |||||| || ||||| || || ||||| || ||| | | | | | ||| ||| | Sbjct 16594 CAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCT 16653 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 |||||| |||||| |||||||| || |||| ||| | | | | |||||| || Sbjct 16654 CATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTT 16713 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 || | || ||| ||| || | || || | |||||| |||||||| ||||| | || Sbjct 16714 ACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 | ||| | | | || |||| ||| || ||||| ||||| | ||||||||| |||||||| Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 ||| || | | ||| || | | ||| || ||| || ||||| |||| ||| || || Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 >seq3858 Length=10210 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| ||||| ||||| | |||||| || | |||| | || | |||||||| | Sbjct 6531 TTATTTCCTCCTTGATCAACATATCTCGCTACGCTATTGAATACACGTAACATTGGCACG 6472 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 ||||| |||||| |||||| || |||| ||||| || | || | ||||||| Sbjct 6471 ATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTGGTAGCTCTAATATTATGT 6412 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG-TATC 78331 ||| || |||| ||||| || ||||| |||||||| || |||| || | ||| Sbjct 6411 ATGTGTAAGCCTACGCCTCCGGCGGATTTAGAAATTAGAGCACA-CGTTGTAAGGGTATT 6353 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | | ||||| || |||||||| || ||| || |||||||||||| Sbjct 6352 GAAAATACCTTCGATACTGTCTTCTTCCATCGCAATGAGAAAACAGCTA 6304 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||||||||| ||||||||| ||| | | |||||| || | | | |||||| Sbjct 6833 TACAGCTTTTCAAATTCTTCTCCCCAACAATCTTGAAGTCCAGGACACTGACTAGGGCAC 6774 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 ||||| ||| | || |||| | |||| | |||||| ||| || ||||||| Sbjct 6773 ATCAAACTCCATTTTCCTTCTTGTTCTACTCTTCGCATAAATTCATCGGGGATCCATAAC 6714 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 ||| ||||| ||||| | | | |||||||| ||| ||||| || | || | | Sbjct 6713 GCATAAAATAAATCTCTAGCACGAATTTCTTCATGTCCGGTATTTTTACGTAATTCTAAA 6654 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||||| | | || | |||||||||||| ||||| Sbjct 6653 AACTCGAATACGTCTGCATGCCATGGTTCCAGATA 6619 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||||||||| || |||| | || || || || ||||| ||||| | ||| Sbjct 7919 TGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAGGAT 7860 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||| ||||||||||||||||| || || |||||||| || | | ||| | Sbjct 7859 TCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAACGAA 7800 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || || | ||| | | | | ||||| ||||| | ||||||||| | || | Sbjct 7799 TTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAATTAGTT 7740 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || |||| ||| | |||||| |||| ||| Sbjct 7739 GGCTTGACATTCCACATATCGTACTGTAAAAT 7708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694146912697280