Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39349 158 2e-33 seq4462 131 2e-25 seq27620 125 1e-23 seq3858 98.7 1e-15 >seq39349 Length=17693 Score = 158 bits (174), Expect = 2e-33 Identities = 171/226 (76%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||| |||||| |||||||||||| || || || ||||||||||| || | |||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||||||||||||||| ||| |||||||||||| || ||||| ||||| || || | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCACCTTTGAGCCCAATCAG 46828 | | | ||||||||| || | || | | || ||||| ||| ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||| | || ||||||||||| ||||| || |||||||| ||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAA 11437 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| || || || || | ||| ||||| |||||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||| ||||||||| |||| ||||| | || || |||||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| || ||||| || || || ||| || ||||||||||| || |||||| ||| Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 || | | |||| |||| ||||||| | ||| || ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 |||||| || || || || |||||||| ||||| | ||| | |||||||| || | Sbjct 11925 TCTATCAGCCACAAACTCAATATACGTCTTCATTAATTCGCTGTTCATTCCAATCATCGA 11866 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CG-ATATTATC 46578 || || || || || || | ||| |||||||||||| | || ||||| || ||| | || Sbjct 11865 TACAGGCAGGGCATCGGTCAAAAATTCTTGTTCAATAATAACGGCATCACGAATAATTTC 11806 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 |||| | | ||| |||| || || | ||||||||| ||||| ||||| |||||| Sbjct 11805 GATG--ATTTCTTCAACACTAGGCTTTTGAACCAAATGTTTGAACATCAAACAAGCAAAA 11748 Query 46639 TC 46640 || Sbjct 11747 TC 11746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 46325 ACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTT 46384 |||| ||||| |||| | ||| || ||||| | |||||||| || || ||||| || | Sbjct 12140 ACATGACTCCACTTTTCTTGTACTCGCCTACTCTCTTCTCGAAGAAGTTTGTTTTACCAT 12081 Query 46385 CCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| || ||||||||||||||||| |||||||| Sbjct 12080 TCAAAGAAATATTTTCCATAAAATCGAACGGATT 12047 >seq4462 Length=45351 Score = 131 bits (144), Expect = 2e-25 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 ||| || |||||||| || |||||||| || ||| | | | | | ||| ||| | Sbjct 16594 CAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCT 16653 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 |||||| |||||| |||||||| || |||| ||| | | | | |||||| || Sbjct 16654 CATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTT 16713 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 || | || ||| ||| |||| ||| || | |||||| |||||||| ||||| | || Sbjct 16714 ACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 | || | | | || |||| ||| || ||||| ||||| | ||||||||| |||||||| Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 ||| || | | ||| || | | || || ||| ||| ||||| |||| ||| || || Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 >seq27620 Length=20860 Score = 125 bits (138), Expect = 1e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| ||||| || || ||||| || | || ||||| || ||||| | ||||| || | Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || |||||||||||||| |||| ||||| | ||| || || ||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 47010 AGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||| ||||| ||||| || || |||||| || ||||||||||| || || ||| || Sbjct 17856 -GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAA 17798 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || | |||||| |||| ||||||| | ||| || ||| ||| Sbjct 17797 TGAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 113 bits (124), Expect = 6e-20 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| || || ||||| |||||||| ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGA-TATT 46575 | || |||| ||| || || | ||| |||||||| || | ||||| || ||| || | Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 ||| || | | ||| |||| ||| || | ||||||||||||||| ||||||||| Sbjct 18428 TTCG--GTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCA 18371 Query 46636 AAATC 46640 ||||| Sbjct 18370 AAATC 18366 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 46325 ACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTT 46384 |||| ||||| |||| | |||||| || || | ||||||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 46385 CCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| || |||||||||||||||||||| ||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq3858 Length=10210 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 77006 AACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATA 77065 ||||| ||||| || || ||||| || || |||| || | | || || || || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 77066 ACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 |||| || |||||| || | |||||||| |||||||| ||||||||||| ||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 || ||| || ||| || |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||||||||| || |||| || || || || || ||||| ||||| | ||| Sbjct 7919 TGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAGGAT 7860 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||| |||||||||||||| || || || |||||||| || | | ||| | Sbjct 7859 TCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAACGAA 7800 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || || | ||| | | | | ||||| ||||| | ||||||||| | || | | Sbjct 7799 TTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAATTAGTT 7740 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || |||| ||| | |||||| |||| ||| Sbjct 7739 GGCTTGACATTCCACATATCGTACTGTAAAAT 7708 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| ||||||||| ||| | | |||||||| | | | || |||||||| Sbjct 6825 TTCAAATTCTTCTCCCCAACAATCTTGAAGTCCAGGACACTGACTAGGGCACATCAAACT 6766 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | || |||| | || | | |||||| ||| || ||||||| ||| ||| Sbjct 6765 CCATTTTCCTTCTTGTTCTACTCTTCGCATAAATTCATCGGGGATCCATAACGCATAAAA 6706 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || ||||| | | | |||||||| ||| ||||| || | |||| ||||| | Sbjct 6705 TAAATCTCTAGCACGAATTTCTTCATGTCCGGTATTTTTACGTAATTCTAAAAACTCGAA 6646 Query 76699 AATATCAGAATGCCATGGTTCTAGATA 76725 | || | |||||||||||| ||||| Sbjct 6645 TACGTCTGCATGCCATGGTTCCAGATA 6619 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| | || || |||||| | |||| || || || |||| Sbjct 8351 TCCAGCCGTAGAAGTGCATAGAAGATAAATTTGAATAATTTGGATTCGCCATGTGTATAT 8292 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | || |||||| ||||||||||| | ||| || |||||||| | || ||||| Sbjct 8291 TTAAGCTTTGTGATTGATCTATGAAAGCTCCACGATCGGCTGCCATTTTCAAAACGGTCT 8232 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 |||| |||||||||| |||||| Sbjct 8231 TTTGTTTGATTTCCCAAACAGTTTT 8207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712398790208640