Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq15454 134 3e-26 seq37708 125 2e-23 seq48073 118 2e-21 >seq15454 Length=877 Score = 134 bits (148), Expect = 3e-26 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 |||| || || |||||||| | ||| ||||| |||||||| | ||||| |||||||| Sbjct 224 CTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTT--CCGGCGAA 167 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| | | |||||||| | | ||| |||||||| ||||||||||| ||||||| | Sbjct 166 GATTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATT 107 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 |||| | || ||| || ||||| ||||| |||||||| ||||| || || ||||| Sbjct 106 TTCTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCAC 47 Query 152093 GAAGACCTGCAT 152104 ||| | |||||| Sbjct 46 GAAAATCTGCAT 35 >seq37708 Length=8338 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||||||||||||||||||||||| | ||||| || ||| Sbjct 4202 AGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCT 4261 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| |||||||| || || | |||||||| | | ||||| || || ||| Sbjct 4262 TCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 4321 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| | || | | |||| | ||| ||||| || ||||| ||| Sbjct 4322 TGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTT 4381 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | || |||||||||| ||||| Sbjct 4382 TTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || |||||||||||||||||||| | | ||||| |||||||| | Sbjct 4435 CAAG-TGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCTTCGA 4493 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | ||||| || | || || |||||||| ||||||| Sbjct 4494 GCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCTTGAA 4553 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | |||| | ||| ||||| | || ||||| || | Sbjct 4554 TTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTCTTAC 4613 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | |||||| Sbjct 4614 CAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || ||||| ||||||||||| || | | |||||| |||||| Sbjct 3746 AGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCT 3805 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| || | || || || | | ||||||||| || ||| Sbjct 3806 TCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCT 3865 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| || | || | | || | ||| ||||| || || || ||| Sbjct 3866 TGGATTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTT 3925 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | |||||| Sbjct 3926 TTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| ||| || | ||||| || || |||||||||||||| || || | | ||| Sbjct 4877 CTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTT 4936 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || ||| || |||||||| || | ||||| || | | ||| ||| Sbjct 4937 CTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCT 4996 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| |||||| | || | |||| ||||||||| || Sbjct 4997 TCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGG 5056 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || | || || || |||| ||||||||| Sbjct 5057 GTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 104 bits (114), Expect = 5e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| || || || || ||||| ||||| ||||||| | || | || Sbjct 3514 TCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCC 3573 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| |||||||| ||||| | |||||||| | | ||||| || || Sbjct 3574 ATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTT 3633 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGT 152065 ||||||||||| ||||| | || | | |||| ||| ||||||||| | || Sbjct 3634 ATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTC---ACTGGGCTCTACTTCTAACGT 3690 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | || |||||||||| ||||| Sbjct 3691 GATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||||| ||||||||||| || ||||||| || || || ||||| Sbjct 4657 GAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATC 4716 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||| ||||| | | || ||||| | | ||| ||||| || || Sbjct 4717 TTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTC 4776 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| || ||| | || | |||| | ||| ||||| || ||||| || Sbjct 4777 TTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGT 4836 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || | || || ||||| | ||||| Sbjct 4837 TTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 >seq48073 Length=7537 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | |||||| ||||| ||||| || ||||| |||||| ||||||| || Sbjct 5815 CTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCG 5756 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | |||||||||||||| | || || ||||| | | ||| |||||||| Sbjct 5755 TCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTG 5696 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || ||| || |||| | | | || || ||||||||| | ||||| Sbjct 5695 TCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATG 5636 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||| ||||| | ||||| Sbjct 5635 GTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||| || || |||||||| || ||||| ||| ||||| | || ||||| Sbjct 5582 GACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCTTC 5523 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| |||||||| || | || ||||||||| | | ||| ||||| || ||||| Sbjct 5522 CAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCTTG 5463 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||||||| | || | | |||| || || ||||| | || || || || Sbjct 5462 AATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTCTT 5403 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || || | |||||| || Sbjct 5402 TCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || ||||||||||| |||||||||||| ||||||| || ||||| | | Sbjct 6487 TGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGT 6428 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | || ||||||||| | | || ||||| || || |||||||| Sbjct 6427 TTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAATTTTA 6368 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | || || |||||||| || ||||| ||||| || || Sbjct 6367 GCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTT 6308 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | ||||| Sbjct 6307 AACGTTTTAACAAAAATTTGCAT 6285 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | ||| || ||||| ||||| || ||||| |||||| ||||||| || Sbjct 6727 CTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCG 6668 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | ||| ||||||||||| | || |||||||| | | ||| ||||| || Sbjct 6667 TCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTG 6608 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||||||||| ||| ||| | || | | | || || || || || | ||||| Sbjct 6607 TCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTAATG 6548 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || | ||| || || || | |||||| Sbjct 6547 GTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || ||||| ||||| ||||| ||| || || | || ||||||| Sbjct 6032 ATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCGTCTTCTAATTG 5973 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | | |||||||| | | ||| ||||| || ||||||||||| Sbjct 5972 TTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGAATTTT 5913 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | | | ||||| ||||| || || |||||||| || || || Sbjct 5912 CGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGTCTTTCCGGT 5853 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | ||| || ||||| | |||||| Sbjct 5852 CAAAGTTTTAACGAAAATTTGCATT 5828 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || ||||||||||| |||||||||||| | ||| | || ||||| | Sbjct 6944 ATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCCAACTG 6885 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | ||||||||| | || ||||||||| || || |||||||| Sbjct 6884 TTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGAATTTT 6825 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | | || || ||||| || || ||||| || || || || Sbjct 6824 GGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGT 6765 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | ||| || ||||| | |||||| Sbjct 6764 CAAAGTTTTAACGAAAATTTGCATT 6740 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || ||||| |||||||| || || |||||| | ||| | || ||||| | Sbjct 6260 ATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTG 6201 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | ||||||||||| | | ||| ||||| || ||||| || || Sbjct 6200 TTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTT 6141 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | |||| || || ||||| | || || ||||| || || Sbjct 6140 GGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGT 6081 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || | ||||| Sbjct 6080 GAGCGTTTTAACAAAAATTTGCAT 6057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152932292360442